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We should add default codon tables of the following organisms:
1. Escherichia coli MG1655
2. Bacillus subtilis 168
3. Vibrio natriegens (whatever type strain)
4. Saccharomyces cerevisiae BY4741/…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/thsadiq/scoup
Confirm the following by editing ea…
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Aim: write some code that produces a table of codon pairs with their genes and the positions of the aa's which would function as the input for a metafeature plot for inhibitory codon pairs (see Gamble…
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Hey,
Is it possible to specify the start codon with OrfM
Thanks,
Ismail
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Hi all,
I noticed that there is not module, class, or function for calculating a codon optimized sequence.
I would like to help by contributing code for this calculator, but I would need some guidanc…
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Please add an Documentation for all the codons and what they do.
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Hi,
I was wondering how to add an alternative start codon list in the RiboCode step. Thank you for your help!
Best,
Qidi
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Is it possible to set spaln parameters when running ProtHin? I want to specify the translation table I want spaln to use.
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I'm not sure but seems in the "codon to amino acid" table the amino acid column should have title "amino acid" instead of "Protein":
![Selection_159](https://user-images.githubusercontent.com/46182…