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How are protein-stemmed glyphs to be used in conjunction with CDS/CDS domain glyphs?
Should CDS glyphs be required to represent the full start->stop codon open reading frame?
The polypeptide-stemm…
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Dear github author:
Recently I am interested in your this project, and could you share with me some explanation files for this project,such as Documents or referenced paper, thank you very much. …
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Hello, I'm trying to calculate CU for ribosomal genes, but it only shows "self".
`milc
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The CPython implementation of `itertools.product()` from the Python Standard Library returns an iterator of tuples, whereas the codon version returns lists. Is this on purpose? I think it would be bes…
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I indexed a genome, using a gtf file to add annotation. The indexing finished successfully with no warning messages in the Log,out file, but as I poked around the various other output files, I saw t…
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We want to pull out the PAC (integer list of ALT percentages) from the INFO column as well as the ALT column (character list of the ALT bases). Also include the DP. This needs to be done for every nuc…
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Hi, Ann,
I got an error when running metapop installed from pip with the following command:
metapop --input_samples ./bamfile --reference ./reference --norm tp-notp-166-metapop_ctfile.txt --th…
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Hi team,
I've been trying to get BG7 working for a while (annotating a ~5MB Streptomyces genome), and now think I've found a couple of bugs and workarounds. I'm working with the latest version as of…
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So I tried to run the sample code in the manual for barley setup, with the only change being that I changed the directories for the blast databases and the dependencies. Code below.
wyant008@labqi046…
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In the third step, InPACT_quantify is running with the following error, and I would like to know which file is at fault
Traceback (most recent call last):
File "/home/data/miniconda3/envs/InPAC…