metaGmetapop metapop issues

metaGmetapop / metapop

A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations

MIT License

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issues

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ZeroDivisionError: division by zero

#33 hdflorezr opened 1 month ago
0
FileNotFoundError ... _initial.bam.bai

#32 funnell closed 7 months ago
1
Infinite pN/pS values

#31 azk001 opened 8 months ago
0
Metapop for viral bins microdiversity calculation

#30 MengzhiJ closed 8 months ago
0
There was an error in a '. bam' file while running Linking SNPs, but the other files are fine

#29 Lilingyuns opened 9 months ago
0
Error while Calculating and Visualizing Microdiversity using MetaPop

#28 1endless opened 9 months ago
0
About Mamba

#27 ewars closed 10 months ago
0
error in breadth_and_depth_output function from metapop_filter.py

#26 beacamara opened 1 year ago
1
local variable 'contig' referenced before assignment

#25 wwood closed 1 year ago
7
1. Suitable for the analysis of ssDNA viral population? 2. FileNotFoundError: 'MetaPop/09.Linked_SNPs/range_131_reads.txt'

#24 ChenTianYi99 opened 1 year ago
4
Macrodiversity Error: NAs produced by integer overflow

#23 DanielSprockett opened 1 year ago
1
Error while Refining SNVs into SNPs step

#22 ShailNair opened 1 year ago
2
Installation problem

#21 ShailNair closed 1 year ago
1
multiprocessing bug only for python 3.8 or later

#20 jianshu93 opened 1 year ago
0
FileNotFoundError at the FST step

#19 MalickNdiye opened 1 year ago
4
Help: "the file did not appear to be a SAM or BAM format file"

#18 Danrui-Wang opened 1 year ago
4
Help: difference between local and global SNP calls

#17 hdore opened 1 year ago
1
Output docs + pN/pS ratio

#16 PegahDan opened 1 year ago
1
R figure issue

#15 ChaoLab opened 2 years ago
1
Is it required to filter the bam files?

#14 ChaoLab opened 2 years ago
4
06.SNP_counts step running for an abnormally long time

#13 ChaoLab opened 2 years ago
34
Can metapop increase its mapping criteria to solve strain-level community marcro-/micro-diversity?

#12 ChaoLab opened 2 years ago
1
ValueError: invalid literal for int() with base 10

#11 liupfskygre opened 2 years ago
4
MetaPop can not be used on Cyverse

#10 ZhengXiaoxuan11542 opened 2 years ago
3
Initial conda step gets stuck on solving the environment unless you install them individually

#9 michaelamann opened 3 years ago
0
Files issue

#8 ebustos128 opened 3 years ago
2
Autism dataset running example

#7 hh1985 opened 3 years ago
1
Error in fixation index step

#6 susheelbhanu opened 3 years ago
1
Error in micro diversity visualization

#5 ZongzhiWu opened 3 years ago
2
Some errors in rbindlist

#4 ZongzhiWu closed 3 years ago
1
error for macrodiversity

#3 Thexiyang opened 3 years ago
10
possible typo in the code and readme

#2 Thexiyang opened 3 years ago
1
depth_by_pos.tsv is empty

#1 RyanCook94 opened 3 years ago
1