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Hello!
I am getting the following error for stringtie command: stringtie -o outputfile -G annotationfile bamfile
"Error: no valid ID found for GFF record
Aborted (core dumped)"
I am using the …
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in one of the closed issue says the Seg fault issue is fixed on v2.5 but I am still getting it on a 14gb genome:
pblat -threads=6 -noHead -fastMap -tileSize=12 -ooc=4461.ooc -minScore=100 -minIdentit…
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Hi! Thanks for your work.
Is TrEMOLO suitable for application to the human genome?
I'm tring to detect insertions in human by TrEMOLO, but the program always stays at processing the genome.fast…
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I noticed that a lot of memory is used when `link_clusters.pl` is run in parallel. Can you explain what would determine the memory usage for each execution of this script? Depending on the response, …
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### Description of the bug
ERROR ~ Error executing process > 'NFCORE_CUTANDRUN:CUTANDRUN:CUSTOM_DUMPSOFTWAREVERSIONS (1)'
Seems to be when creating multiQC file? Perhaps this is due to wanting to …
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I called defense-finder run -o Typifier_results/Defensefinder_output/GCA_022437905.1_defensefinder -w 1 Intermediate_files/Genomes/GCA_022437905.1.fna
defense-finder 1.3.0 aborted with the followin…
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## Check Documentation
I have checked the following places for your error:
I have checked both of these and looked through the introduction to see which steps might require the genome.
- [x] …
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Hi everyone I am new to MaSuRCA Reference guided assembly. I am using chromosome_scaffolder.sh for scaffoding. I have shared the log info, I don't know what is the error. Could you help me with this?
…
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After importing a region into essential genome, IPU/OPU/CORE (ex vision_C) mappings to the region are showing up as "decrease filter d" but in the code, it is the correct "lateral inhibition".
Use …
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### Description of the bug
Hi,
I have been using nf-core/rnasq for a long time, but with the update of Nextflow, I am receiving the following error messages. I downloaded my fastq files with asper…