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**Is your feature request related to a problem? Please describe.**
Usually a user is interested only in a particular region, which is not a bounding box but e.g. a selection of lakes. Currently we ca…
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Hello,
I am trying to import a file into phyloseq that does not look like the files in the tutorials. The samples are repeated mulitple times, as are the sequences. I would like to treat the sequence…
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### Contact Details
_No response_
### Dataset description
Continuous monitoring for cyanobacteria blooms in small, inland water bodies via in-situ sampling and analysis can be challenging not only …
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Hello developer! ,
I'm using geom_sankey() to plot microbial taxonomies by given taxonomic ranks. This is what I did:
`colnames(taxonomy_table)`
> "Domain" "Phylum" "Class" "Order" "Famil…
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Hi!
I am struggling to put together the output of classification().
I have a list of IDs (ids) that I wanted to get the different taxonomic levels from, so I ran the code:
> taxa
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The testrules tests pass for this rule:
```
m.+
moment
The word starts with 'm', but is not 'moment'.
See you in a minute.
Magnificent!
All m…
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Hi Zuguang,
It is so strange that the Heatmap function doesn't give me the desired input row order when using the rowAnnotation.
What I want is that it directly plots the matrix, because I alrea…
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Hi all,
I am using below code for phyloseq object and wanted to remove chloroplast taxa using subset_taxa but it is not working. First time I am facing this issue, could anyone please suggest why t…
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#### A reconstruction is a the broad database of reactions, and becomes a model when it is initialised with constraints.
> The difference between a reconstruction and condition-specific models deri…
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1. [ ] (1) Refresh loop a little slow - feels unresponsive when mouse moves over a clickable area
2. [x] (2) Back button does not work at all - it used to take user back to previous places in the tre…