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I am working in bacterial strains isolated from insect-guts and we have several strains sequenced. Asap looks like the kind of program that will very much fit the needs of the analysis that we are loo…
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Right now it takes Falcon about an hour or so to read through (with mammalian genomes) all of the directories to determine what has been done and what jobs still need to be submitted. My proposal is …
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Hi,
I try to run falcon on a large dataset (50 smrtcells). 126 subdirectories were created (from 126 blocks) in the 0-rawreads directory and are being processed.
But instead of processing all of th…
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There came the error reports of some m_* tasks in 1-preads_ovl directory. What should I do to restart the job?
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I needed to stop falcon because it was filling the memory. Here is my fc_run.cfg (for a genome of size ~150Mb and a computer with 500GB memory):
`[General]`
`job_type=local`
`# list of files of the …
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Hi, I am using the falcon assembler for assembling fungal genome and its genome size is around 120 Mb and it just produced the 184K of the p-contigs. Below is my config file
```ini
[General]
use_tm…
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Hello
I found that intriguing sentence in your paper
_"Therefore, integrating HINGE with other overlapping tools such as MHAP or Minimap can be done if different levels of alignment sensitivity o…
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Hi, Chris,
I sometimes would prefer to have falcon just skip a problem las file than have to debug it. Right now, for example, I have 3 (out of thousands) of m_ directories that are giving LA4Falcon…
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Dear Devs,
I don't believe this is a duplicate question. Perhaps it can be put in FAQ.
I am using FALCON-integrate 1.7.5.
As the question states, I would like to know how to run FALCON quickly on a…
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Hi there,
It is normal to loss considerable N50 length after the correction step?, in my case when from N50 13000 to N50 7000
I have about 40X of coverage bellow my pre_assembly_stats.json and fc_r…