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I have a modpack that every time I install DAPI, it doesn't load, it crashes with the output error 1 but without any log, the mojang screen doesn't even appear, there is no log for me to post because …
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Hello, excited to try out this method. I'm currently adapting the 'minimal example' from the docs to 4 sections. My data consists of 4 tiffs with DAPI staining, and 4 csv files with x,y,z coords and g…
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Hi,
I want to render a specific channel in a Xenium data image using `.pl.render_images()`.
If I don't specified a colormap (i.e. input argument `cmap=None` by default), it works, however if I spe…
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Hi @heihaizhengdong , I'd like to know what's the meaning of `plot_with_dapi` in most clustermap functions? In my opinion, if it is set to `False` then the spots overlapping with dapi will be discarde…
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In some of our experiments we have different number of channels for some of the cycles. This results in mismatched numbering in the order of the channels, for example:
cycle 1 has DAPI only -> DAPI …
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https://dojotoolkit.org/dapi/ works but https://dojotoolkit.org/dapi doesn't. Ideally both should work, especially since https://dojotoolkit.org/api (without a slash) works.
Filing this ticket he…
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Currently the dapi repository is registered as an npm module e.g. see https://npmjs.org/package/dapi
Is this actually needed?
It's not a package, it's an application and I can't see how this fits wit…
lbod updated
11 years ago
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Things to mention:
- Need to update program on computers to fix bugs - remove_edge_cells on rectangular (non-square) imgs, and different naming convention in confocal imgs in mask channel ('DAPI' vs …
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Hi,
The Xenium are imaging-based ST technology so that the Xenium dataset's spatial coordinates are not supposed to be grid.
Why does the TENX99 dataset have the grid coordinates.
I check the …
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I see that the current code has no `dapi` support.