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mal-boisestate
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Immunostained_Image_Analysis
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Train model on 20 time fraims
#59
ninanikitina
opened
1 year ago
0
Train model with different pos_weight
#58
ninanikitina
opened
1 year ago
1
Detect cell area discuss the plan
#57
ninanikitina
opened
1 year ago
0
New project plan for color cell counting in time series
#56
ninanikitina
opened
1 year ago
0
Investigate the low validation rate for larger training data sets
#55
ninanikitina
opened
1 year ago
0
Create model for DIC full-cell recognition
#54
Ben-Ben-M
opened
1 year ago
2
Program updates on lab computers
#53
Ben-Ben-M
opened
1 year ago
1
10x DIC model training continuation
#52
Ben-Ben-M
opened
1 year ago
1
Create lab presentation
#51
Ben-Ben-M
opened
1 year ago
1
Create Training Set with 10 timepoints
#50
Ben-Ben-M
opened
1 year ago
0
Fix channel name verification
#49
ninanikitina
opened
1 year ago
2
Compare results of DAPI model and DIC labeling-based approaches for proof-of-concept
#48
Ben-Ben-M
opened
1 year ago
0
Manually preparing training set masks based on DIC img labeling for 10x
#47
Ben-Ben-M
opened
1 year ago
0
Preparing training set masks based on DAPI model for 10x
#46
Ben-Ben-M
opened
1 year ago
0
Preparing training set imgs (512x512 DIC) for 10x
#45
Ben-Ben-M
opened
1 year ago
1
Retrain model for 10x recognition (if needed)
#44
Ben-Ben-M
opened
1 year ago
1
Add scene compatibility
#43
Ben-Ben-M
opened
1 year ago
0
Add comments to documentations
#42
ninanikitina
opened
1 year ago
1
Program installation for Omar
#41
Ben-Ben-M
opened
1 year ago
2
test task
#40
Ben-Ben-M
closed
1 year ago
1
Get sample images: 10x or 20x
#39
ninanikitina
opened
1 year ago
2
Count cell numbers on 10x or 20x DIC images
#38
ninanikitina
opened
1 year ago
3
Modify remove_edge_cells function
#37
ninanikitina
opened
1 year ago
2
December documentation update
#36
Ben-Ben-M
opened
1 year ago
0
update perinuclear analysis according to Gunes suggestions
#35
Ben-Ben-M
opened
1 year ago
1
Experiment with 63x stitched imgs
#34
Ben-Ben-M
opened
1 year ago
0
Intensity sum error
#33
ninanikitina
opened
1 year ago
0
Test issue to check ZenHub
#32
ninanikitina
opened
1 year ago
0
Create a functionality that allow analyzing stitched images
#31
ninanikitina
opened
1 year ago
0
Fix analyzer constructor inputs in main()
#30
Ben-Ben-M
opened
1 year ago
0
September documentation update
#29
Ben-Ben-M
opened
1 year ago
0
Update gui unet_param input to use both 20x and 63x models
#28
Ben-Ben-M
opened
1 year ago
0
Add perenuc area verification to the images
#27
ninanikitina
opened
2 years ago
1
Refactor stat for Chase
#26
ninanikitina
opened
2 years ago
1
Add 20x unet model, so 20x images can use other model
#25
ninanikitina
opened
2 years ago
0
Add AF350 to mask channel name in GUI
#24
ninanikitina
opened
2 years ago
0
Add rmagnification var to the reader
#23
ninanikitina
opened
2 years ago
0
Refactor save_avg_stat function
#22
ninanikitina
opened
2 years ago
1
Create .config file that helped to manage absolute paths.
#21
ninanikitina
opened
2 years ago
0
add perimeter
#20
ninanikitina
opened
2 years ago
1
Make cut_imagies for unet optional feature
#19
ninanikitina
opened
2 years ago
1
Add signal outside of nuc and total signal
#18
ninanikitina
opened
2 years ago
1
Add perinuclear area to analysis. Check size of perinucleus area
#17
ninanikitina
opened
2 years ago
3
Create presentation for Monday Meeting
#16
Ben-Ben-M
closed
2 years ago
0
add option to choose cell numbering in GUI
#15
ninanikitina
closed
2 years ago
1
Train new DAPI model with Anamaria images. No aug!
#14
ninanikitina
opened
2 years ago
0
Create separate file with mean stat for each image
#13
ninanikitina
opened
2 years ago
0
Add mean stat into the file
#12
ninanikitina
opened
2 years ago
0
check if DIC verification can be possible
#11
ninanikitina
opened
2 years ago
0
Test program on ENG401000 machine
#10
ninanikitina
opened
2 years ago
0
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