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hello
I used this step to install deepbgc but t get error at the end
Set up Bioconda and Conda-Forge channels:
conda config --add channels bioconda
conda config --add channels conda-forge
In…
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### Description of feature
Should produce two files:
summary (Sample_Name,Tool,No_Hits)
aggregated (Sample_Name,Tool,Contig,Hit_Name,Probability,....)
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We need to make sure that all (relevant) parameters that a user may want to tweak of a given tool are available to be modifiable by the pipelie user (see deepARG, where this is already added).
Bef…
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I see that Deepbgc uses prodigal for gene prediction. Is there a way to run Deepbgc for fungal genomes using another gene prediction tool?
Thanks,
Juliana
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### Description of the bug
Missing database downloading instructions for deepBGC in usage documentation
### Command used and terminal output
_No response_
### Relevant files
_No response_
### Sy…
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Hi, there!
I've downloaded 'DeepBGC' on my Mac successfully, but there's some issue reported as follows when I tapped in 'deepbgc info'.
`=================|_|===== version 0.1.30 =====
INFO 26/0…
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Hi,
I sometimes get an error:
```
INFO 05/03 10:31:02 Loading model from: /home/art/.local/share/deepbgc/data/0.1.0/classifier/product_activity.pkl
INFO 05/03 10:31:02 Processing i…
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Hi, I have seen that the paper of e-deepBGC, but from where can I get the source code?
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**Describe the bug**
hello
i try to upload deepbgc .json file to antismash either by online or command line antismash but both ways failed
in the online antismash i can't press submit after upload…
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There are only product classes in the TSV file.
So,
How do I know what the metabolite compound ( Main product ) is?