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nf-core
/
funcscan
(Meta-)genome screening for functional and natural product gene sequences
https://nf-co.re/funcscan
MIT License
69
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20
forks
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Post-release version bump
#416
jasmezz
closed
1 week ago
5
Temp CI change to find out diff in harmizaiution report
#415
jfy133
closed
1 week ago
1
funcscan -profile test failed
#414
asogg
closed
1 week ago
2
Update release date
#413
jasmezz
closed
1 week ago
1
Database preparation docs improvements
#412
jfy133
closed
3 weeks ago
3
Fix hamronization fargene input
#411
jasmezz
closed
3 weeks ago
1
Release PR for 2.0.0
#410
jasmezz
closed
2 weeks ago
1
Fix argNorm/DeepARG overwriting output
#409
jasmezz
closed
1 month ago
2
Update metro workflow
#408
jasmezz
closed
1 month ago
2
Fix comBGC: parsing multiple antiSMASH files
#407
jasmezz
closed
1 month ago
2
Fix tool execution if annotation workflow is skipped
#406
jasmezz
closed
1 month ago
1
ADD argNorm module to ARG subworkflow
#405
Vedanth-Ramji
closed
1 month ago
3
Release version bump to 2.0.0
#404
jasmezz
closed
1 month ago
2
Added antismash params: pfam2go, rre, tfbs
#403
jasmezz
closed
1 month ago
2
Some fixes (docs/combgc)
#402
jasmezz
closed
1 month ago
2
ADD argNorm module to ARG subworkflow
#401
Vedanth-Ramji
closed
1 month ago
4
Fix ampcombi cluster
#400
Darcy220606
closed
2 months ago
3
comBGC column BGC_length inaccurate
#399
martinklapper
closed
1 month ago
3
nf-test wishlist
#398
jasmezz
opened
2 months ago
0
Fix antismash-conda download issue + minor updates
#397
jasmezz
closed
2 months ago
1
Prevent bioawk overwriting input files if input and module output names the same
#396
jfy133
closed
2 months ago
1
A special samplesheet can delete all my sequences
#395
Microbion
closed
2 months ago
3
Fix preannotated input (BGC workflow)
#394
jasmezz
closed
2 months ago
1
Conda antismash vbug
#393
jfy133
closed
2 months ago
2
Consider allowing annotation to run even if downstream screening not run
#392
jfy133
opened
2 months ago
0
Update docs + database params, skip hmmsearch
#391
jasmezz
closed
2 months ago
1
Antismash parameter bug
#390
ewissel
closed
2 months ago
1
Missing Annotation files
#389
xeniaroda29
closed
2 months ago
2
Workflow diagram update for 2.0
#388
jfy133
closed
2 months ago
1
Update abricate to allow custom databases
#387
jfy133
closed
2 months ago
2
Update deepbgc/pipeline
#386
jasmezz
closed
2 months ago
1
A uniform input for all tools in each screening workflow
#385
m3hdad
opened
3 months ago
2
Deprecate AMPCOMBI and add AMPCOMBI2
#384
Darcy220606
closed
3 months ago
1
improving tool documentation & adding tests
#383
ewissel
opened
3 months ago
1
Filter bgc fastas
#382
jfy133
closed
3 months ago
3
Strip original contig splitting approach and preanno orf attempt3
#381
jfy133
closed
3 months ago
2
Missing icons for BGC sections in nextflow schema/parameter docs
#380
jfy133
closed
2 months ago
0
Missing abricate database download instructions in usage
#379
jfy133
closed
2 months ago
0
The spliting of contigs into _long and _short should only be performed when needed, or at least it should be skippable
#378
amizeranschi
closed
2 months ago
1
Fix RGI fail
#377
jfy133
closed
4 months ago
3
In some cases RGI will not produce all files expected for mving for publishing
#376
jfy133
closed
3 months ago
5
Important! Template update for nf-core/tools v2.14.1
#375
nf-core-bot
closed
4 months ago
3
Important! Template update for nf-core/tools v2.14.0
#374
nf-core-bot
closed
4 months ago
1
AMPLIFY_PREDICT exits with a ValueError while checking input
#373
m3hdad
opened
4 months ago
1
Update nf-core subworkflow
#372
jasmezz
closed
4 months ago
1
Fix param arg_amrfinderplus_name
#371
m3hdad
closed
4 months ago
2
deeparg 1.0.4 required to correctly fetch DBs
#370
m3hdad
closed
4 months ago
1
Fix param arg_amrfinderplus_name
#369
m3hdad
closed
4 months ago
3
Fix param `arg_amrfinderplus_name`
#368
jasmezz
closed
4 months ago
2
GUNZIP module is confused by repeated patterns in sample name and fasta path.
#367
m3hdad
closed
2 months ago
2
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