nf-core funcscan issues

nf-core / funcscan

(Meta-)genome screening for functional and natural product gene sequences

https://nf-co.re/funcscan

MIT License

74 stars 20 forks source link

issues

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Download Databases

#425 tpellegrinetti opened 5 days ago
1
How to speed up MMseqs2 taxonomy assignment with GTDB database on large contigs?

#424 lucianhu opened 1 month ago
1
DRAMP download error

#423 jasmezz opened 1 month ago
5
Update citations

#422 jasmezz closed 3 weeks ago
0
Important! Template update for nf-core/tools v3.0.2

#421 nf-core-bot opened 1 month ago
3
Important! Template update for nf-core/tools v3.0.1

#420 nf-core-bot closed 1 month ago
1
Update all 'ubuntu' containers to the same

#419 jfy133 opened 1 month ago
0
Important! Template update for nf-core/tools v3.0.0

#418 nf-core-bot closed 1 month ago
1
RGI may not work with singularity in all cases

#417 jfy133 closed 1 month ago
2
Post-release version bump

#416 jasmezz closed 2 months ago
5
Temp CI change to find out diff in harmizaiution report

#415 jfy133 closed 2 months ago
1
funcscan -profile test failed

#414 asogg closed 2 months ago
2
Update release date

#413 jasmezz closed 2 months ago
1
Database preparation docs improvements

#412 jfy133 closed 3 months ago
3
Fix hamronization fargene input

#411 jasmezz closed 3 months ago
1
Release PR for 2.0.0

#410 jasmezz closed 2 months ago
1
Fix argNorm/DeepARG overwriting output

#409 jasmezz closed 3 months ago
2
Update metro workflow

#408 jasmezz closed 3 months ago
2
Fix comBGC: parsing multiple antiSMASH files

#407 jasmezz closed 3 months ago
2
Fix tool execution if annotation workflow is skipped

#406 jasmezz closed 4 months ago
1
ADD argNorm module to ARG subworkflow

#405 Vedanth-Ramji closed 3 months ago
3
Release version bump to 2.0.0

#404 jasmezz closed 3 months ago
2
Added antismash params: pfam2go, rre, tfbs

#403 jasmezz closed 4 months ago
2
Some fixes (docs/combgc)

#402 jasmezz closed 4 months ago
2
ADD argNorm module to ARG subworkflow

#401 Vedanth-Ramji closed 4 months ago
4
Fix ampcombi cluster

#400 Darcy220606 closed 4 months ago
3
comBGC column BGC_length inaccurate

#399 martinklapper closed 4 months ago
3
nf-test wishlist

#398 jasmezz opened 4 months ago
0
Fix antismash-conda download issue + minor updates

#397 jasmezz closed 4 months ago
1
Prevent bioawk overwriting input files if input and module output names the same

#396 jfy133 closed 4 months ago
1
A special samplesheet can delete all my sequences

#395 Microbion closed 4 months ago
3
Fix preannotated input (BGC workflow)

#394 jasmezz closed 4 months ago
1
Conda antismash vbug

#393 jfy133 closed 4 months ago
2
Consider allowing annotation to run even if downstream screening not run

#392 jfy133 opened 4 months ago
0
Update docs + database params, skip hmmsearch

#391 jasmezz closed 4 months ago
1
Antismash parameter bug

#390 ewissel closed 4 months ago
1
Missing Annotation files

#389 xeniaroda29 closed 4 months ago
2
Workflow diagram update for 2.0

#388 jfy133 closed 4 months ago
1
Update abricate to allow custom databases

#387 jfy133 closed 5 months ago
2
Update deepbgc/pipeline

#386 jasmezz closed 5 months ago
1
A uniform input for all tools in each screening workflow

#385 m3hdad opened 5 months ago
2
Deprecate AMPCOMBI and add AMPCOMBI2

#384 Darcy220606 closed 5 months ago
1
improving tool documentation & adding tests

#383 ewissel opened 5 months ago
1
Filter bgc fastas

#382 jfy133 closed 5 months ago
3
Strip original contig splitting approach and preanno orf attempt3

#381 jfy133 closed 5 months ago
2
Missing icons for BGC sections in nextflow schema/parameter docs

#380 jfy133 closed 4 months ago
0
Missing abricate database download instructions in usage

#379 jfy133 closed 5 months ago
0
The spliting of contigs into _long and _short should only be performed when needed, or at least it should be skippable

#378 amizeranschi closed 5 months ago
1
Fix RGI fail

#377 jfy133 closed 6 months ago
3
In some cases RGI will not produce all files expected for mving for publishing

#376 jfy133 closed 6 months ago
5