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nf-core
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funcscan
(Meta-)genome screening for functional and natural product gene sequences
https://nf-co.re/funcscan
MIT License
69
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20
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Add nf-test
#366
jfy133
closed
2 months ago
6
Fix AMRFinderPlus database
#365
jasmezz
closed
4 months ago
1
Workflow diagram is broken in `dev`
#364
jfy133
closed
2 months ago
1
Fix deepbgc docs
#363
jasmezz
closed
4 months ago
1
Update publishDir of bakta
#362
jasmezz
closed
4 months ago
1
Contig separation
#361
jfy133
closed
5 months ago
2
Split input assemblies into BGC vs ARG/AMP compatible length types
#360
jfy133
closed
4 months ago
1
Improve RGI database handling
#359
jasmezz
closed
5 months ago
3
Version bump AMPlify
#358
jasmezz
closed
5 months ago
2
Fix BAKTA publish dir
#357
Darcy220606
closed
4 months ago
1
Add missing essential parameters for antismash
#356
Darcy220606
closed
2 months ago
4
Remove warning about broken DeepBGC database links from docs
#355
jasmezz
closed
4 months ago
1
Mention AMPcombi and DRAMP database in usage.md
#354
jasmezz
closed
3 months ago
2
Add taxonomy in workflow diagram
#353
Darcy220606
closed
5 months ago
7
init
#352
ayushkamat
closed
5 months ago
2
Big modules update
#351
jasmezz
closed
5 months ago
4
Post-patch release dev update
#350
jasmezz
closed
6 months ago
1
Post-release version bump to 1.2.0dev
#349
jasmezz
closed
6 months ago
4
change samplesheet from large testdataset to reduced
#348
Darcy220606
closed
6 months ago
1
Update configfiles for
#347
Darcy220606
closed
6 months ago
2
Hotfix: pin nf-validation
#346
jfy133
closed
6 months ago
2
Important! Template update for nf-core/tools v2.13.1
#345
nf-core-bot
closed
6 months ago
3
Preparing template merge 2.13
#344
jasmezz
closed
6 months ago
2
Add mmseqs2 taxonomy
#343
Darcy220606
closed
5 months ago
7
URGENT: pin nf-validation version
#342
nvnieuwk
closed
5 months ago
2
Important! Template update for nf-core/tools v2.13
#341
nf-core-bot
closed
6 months ago
1
Add support for presupplied annotation files (FAA + GFF or FAA + GBK)
#340
jfy133
closed
3 months ago
4
Add BAKTA results to MultiQC
#339
jfy133
opened
7 months ago
0
Add Bakta `meta` mode
#338
jasmezz
closed
7 months ago
1
DEEPARG container not compatible with new nf-core template container options (2.12)
#337
jfy133
closed
7 months ago
1
Update AMPcombi to version 0.2.1
#336
Darcy220606
closed
3 months ago
1
Update several modules
#335
jasmezz
closed
7 months ago
1
Fix diagram version numbers
#334
jfy133
closed
7 months ago
2
Reorder/rename hamronization summary columns
#333
Darcy220606
closed
5 months ago
0
Important! Template update for nf-core/tools v2.12
#332
nf-core-bot
closed
7 months ago
7
add nf-test tests and snapshots
#331
jfy133
closed
4 months ago
3
Add module: resfinder
#330
jasmezz
opened
7 months ago
0
Amrfinderplus_update not working in test run
#328
pdy1084
closed
4 months ago
4
Important! Template update for nf-core/tools v2.11
#327
nf-core-bot
closed
7 months ago
2
Adapt deepBGC to use GPUs
#326
Darcy220606
opened
9 months ago
4
Add pharokka to nf-core/funcscan
#329
CarsonJM
opened
9 months ago
0
Update Bakta to 1.9.2
#325
jasmezz
closed
7 months ago
2
Update deeparg/deepbgc versions
#324
jasmezz
closed
9 months ago
1
add nf-test tests and snapshots
#323
louperelo
closed
7 months ago
2
Update all modules
#322
jasmezz
closed
10 months ago
2
Update hAMRonization to v1.1.4
#321
louperelo
closed
6 months ago
1
Add Unzipping deeparg db option
#320
jfy133
closed
7 months ago
4
Add ability to unzip a archived version of the deepARG database as input
#319
jfy133
closed
7 months ago
2
Include Contig taxonomic classification before going into the summary modules
#318
Darcy220606
closed
5 months ago
1
Post-release version bump to 1.1.5dev
#317
jasmezz
closed
10 months ago
2
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