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Hello,
I have a question about the filtering steps are done by TRUST4? I read the paper, but wanted to know if there are more criteria for filtering the reads/cells, which are not shared in the pap…
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Hi, thanks for the great tool.
I have assembled various genomes with hifiasm (ver.0.16.0-r369) and never had any errors. However, hifiasm (ver.0.18.2-r467) caused errors in some assemblies. I genera…
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The answer here could simply be 'no' 😄 but as this question came up recently for me, and it is one I've seen mentioned on the `nf-core/scrna` slack, I figured I'd raise it here to get your thoughts. …
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Here is my preferred solution to dealing with the current implementation of metaImport and validateData.
1. validateData.py and metaImport.py should be the preferred mechanisms to validate and load d…
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### What is the bug?
When creating a child from a parent, the value entered from relationship reference or relationship value is not the parent value.
Parent table: "pistes" with id serial and cod…
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# Problem Space
Create discrete set of standard concepts to encapsulate disease "status" observations over time. Likely the majority of these observations will come from notes and consequentially b…
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Hi there,
Great tool! Thank you for making this tool.
I have a basic question, and hope to get some clarification through this forum. I was going through the example output you have described …
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Hello, I am a TRUST4 beginner, so the questions may be quite basic. I hope you can patiently answer them.
In my studies, I encountered some situations where when I read a directly downloaded Bam file…
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Hello again! This is a follow-up to issue #247, thank you so much for your insights there!
So I managed to run TRUST4 on my SMARTer data with the following command (which still took really too long…
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* **Name of tool:**
MAGeCK / MAGeCK-VISPR
* **Tool description:**
CRIPSR screen analysis tool
* **Tool homepage:**
http://liulab.dfci.harvard.edu/Mageck/
https://bitbucket.org/liulab/mageck-visp…