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From this [comment](https://github.com/AlexsLemonade/scpca-docs/pull/115#pullrequestreview-1468291683):
> More broadly, I think we may want to revisit this whole document to remove most of the filt…
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Once we have made the necessary changes to the cell type report for regular single-cell/single-nuclei samples, we will want to account for displaying cell type annotations in multiplexed samples.
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After trying the tutorial during the ECFA workshop in Paestum, I had trouble running the final plotting script of the [gaudi_alg_higgs](https://github.com/key4hep/key4hep-tutorials/tree/513774de58dc4d…
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In #587, we are making some modifications to references that mean multiple tissues/ organs will be found in a single reference for CellAssign. I think it would be useful to be able to include the list…
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Disclaimer: This is again one of those things where I am not sure whether the real issue is actually here. It is possible that the actual problem is in `k4FWCore` or in `k4LCIOReader`, which are obvio…
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**In what version(s) of Spring for Apache Kafka are you seeing this issue?**
2.8.11
**Describe the bug**
Following the documentation about Spring for Apache Kafka, I've tried the examples at …
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> Yes, so this does not handle alternative experiments. Our function that we are using will only convert the main experiment. Looking back on [AlexsLemonade/scpcaTools#115](https://github.com/AlexsLe…
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In updating `scpca-nf` to be compatible with running samples from multiple organisms at once, we added new entries to the `scpca-meta.json` file that is produced from the workflow. Because we output a…
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Viridis is not great for G3/G4 comparisons (blue/purple too close) and WNT gets yellow... pick another scheme and update plots throughout.
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**Please provide some background on the proposed additions or changes.**
Once we have completed conda updates, we will want to create a branch specifically for evals of the core analysis workflow.
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