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AlexsLemonade
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scpca-downstream-analyses
This repository is intended to store our pipeline for marker genes analysis.
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Update scpcaTools version
#378
allyhawkins
closed
1 year ago
0
374 Update packages to fix error when building conda environment
#377
jashapiro
closed
1 year ago
2
Jashapiro/env update
#376
jashapiro
closed
1 year ago
0
Update snakemake version docs
#375
sjspielman
closed
1 year ago
4
Update packages to fix error when building conda environment
#374
allyhawkins
closed
1 year ago
7
Replace magrittr pipes in integration module
#373
cbethell
closed
1 year ago
0
Release v0.1.6 - data integration module
#372
cbethell
closed
1 year ago
1
Fix the conda default
#371
cbethell
closed
1 year ago
0
Update docs with details on integration report
#370
cbethell
closed
1 year ago
0
Add expected input and output to integration docs
#369
cbethell
closed
1 year ago
1
Add within-batch ARI plots to report template
#368
cbethell
closed
1 year ago
2
Prepare for scpca-downstream-analyses release v0.1.6
#367
allyhawkins
closed
1 year ago
1
Add batch ASW plots to integration report
#366
cbethell
closed
1 year ago
8
Make `use-conda` a default
#365
cbethell
closed
1 year ago
0
Initiate data integration report template
#364
cbethell
closed
1 year ago
3
Add integration params to additional params documentation
#363
cbethell
closed
1 year ago
1
Add expected input and output sections to integration docs
#362
cbethell
closed
1 year ago
1
Update docs with details on integration report
#361
cbethell
closed
1 year ago
1
Make `--use-conda` a default
#360
cbethell
closed
1 year ago
2
Add data integration module README
#359
cbethell
closed
1 year ago
1
Fix link in clustering docs on development branch
#358
cbethell
closed
1 year ago
0
Hot-fix: Fix link in clustering docs
#357
cbethell
closed
1 year ago
0
Dead link in clustering README
#356
sjspielman
closed
1 year ago
0
Add batch ASW visualization to integration report
#355
cbethell
closed
1 year ago
1
Add within-batch ARI visualization to integration report
#354
cbethell
closed
1 year ago
1
Add batch ARI visualization to integration report
#353
cbethell
opened
1 year ago
0
Add iLISI visualization to integration report
#352
cbethell
opened
1 year ago
3
Initiate data integration html report
#351
cbethell
closed
1 year ago
1
Initiate data integration module docs
#350
cbethell
closed
1 year ago
1
Add integration rule to `integration.snakefile`
#349
cbethell
closed
1 year ago
5
Incorporate integration order
#348
cbethell
closed
1 year ago
0
Add integration order to integration script
#347
allyhawkins
closed
1 year ago
1
Add script to perform integration
#346
cbethell
closed
1 year ago
1
Data Integration: Add integration rule to Snakefile
#345
cbethell
closed
1 year ago
1
Data Integration: Develop script to perform integration
#344
cbethell
closed
1 year ago
1
Initiate integration module snakefile
#343
cbethell
closed
1 year ago
1
Allow for merging of SCEs by integration group
#342
cbethell
closed
1 year ago
1
Data Integration: Initiate workflow with merging rule
#341
allyhawkins
closed
1 year ago
1
Data Integration: Allow for merging of SCEs by integration group
#340
allyhawkins
closed
1 year ago
1
Add dimensionality reduction results to merged SCE
#339
cbethell
closed
1 year ago
1
Consider something like readthedocs or wiki for documentation
#338
dvenprasad
opened
1 year ago
1
Initiate merge-sce.R
#337
cbethell
closed
1 year ago
4
Update independent installation docs with required dependencies
#336
cbethell
closed
1 year ago
0
Data Integration Module
#335
cbethell
closed
1 year ago
0
Data integration module: Which integration methods do we want to include as options?
#334
cbethell
closed
1 year ago
1
Data integration module: Add dimensionality reduction results to merged SCE
#333
cbethell
closed
1 year ago
1
Data integration module: Initiate merge SCE script
#332
cbethell
closed
1 year ago
1
Release v0.1.5
#331
cbethell
closed
1 year ago
0
Set theme and update GOI plot labels
#330
cbethell
closed
1 year ago
2
Sync file path instructions
#329
cbethell
closed
1 year ago
2
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