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Hi,
I Ran the AS-pipeline for the bam that my colleague has run by AA(1.2_r2) and AC (0.4.13) but got different results, then I considered it as a version problem.
So, I install the AA and AC as …
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Thank you very much for developing this package!
I'm relatively new to the coding world and was wondering if you could advise me on the follow issue. I started working through your workflow with on…
SITRR updated
8 months ago
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Dear,
I have used AmpliconArchitect to calculate ecDNA,and I got the output store in {sample}_circle.txt, It is look like this:
> ......
> Segment 39 chr17 74733453 75044078
> Segment 40 chr17 7…
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Dear Viraj,
I am Iñigo Prada-Luengo. The developer behind [Circle-Map](https://github.com/iprada/Circle-Map). I have really enjoyed reading your manuscript and the algorithmic ideas behind Amplicon…
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Hi,
It's really interesting tool to identify circle DNA from DNAseq data. But, recently, we are considered with the variety of circle DNA length and length of insenrtion of reads, which would influen…
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Dear Inigo:
Hello! About Circle-Map, I use Circle-Map version=1.1.3 to identify eccDNA, Circle-Map Realign command to get the result, I want to get the sequence of the spite reads of each eccD…
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Hello,
I've been trying to run amplicon architect for several days now but the run reaches a certain point and does not progress further without giving any errors or terminating. I am running it …
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Hi,
I'm testing one of our samples. I keep receiving this BAM file input error. Could you please provide insight on this? Or anything I may miss for running the workflow?
Best,
TC
```shell…
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Hi Jens,
How to interpret results like "Segments=0+,12+,0-"? There is only one segment in this cycle.
Best,
Keren
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### Description of the bug
The test profile is not working, appears to need samtools I think
### Command used and terminal output
```console
(base) [feshap@n102 ecdna]$ ~/raid/nextflow run nf-core/…