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nf-core
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circdna
Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from cancer and other eukaryotic cells.
https://nf-co.re/circdna
MIT License
25
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14
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Pipeline test is not working
#76
yonatans2
closed
1 month ago
2
Important! Template update for nf-core/tools v2.14.1
#75
nf-core-bot
opened
1 month ago
0
Important! Template update for nf-core/tools v2.14.0
#74
nf-core-bot
closed
1 month ago
1
Error executing process > 'NFCORE_CIRCDNA:CIRCDNA:CIRCLEMAP_REALIGN
#73
ZabalaAitor
opened
2 months ago
2
Important! Template update for nf-core/tools v2.13.1
#72
nf-core-bot
closed
1 month ago
1
Important! Template update for nf-core/tools v2.13
#71
nf-core-bot
closed
4 months ago
0
Important! Template update for nf-core/tools v2.12.1
#70
nf-core-bot
closed
4 months ago
1
Fail to load AmpliconArquitech files
#69
alexmascension
opened
5 months ago
6
--bwa_index: string [database/indexes/GRCm38/BWA/genome.bwt] does not match pattern ^\S+\.\{amb,ann,bwt,pac,sa\}$ (database/indexes/GRCm38/BWA/genome.bwt)
#68
alexmascension
opened
5 months ago
4
Important! Template update for nf-core/tools v2.12
#67
nf-core-bot
closed
5 months ago
1
How about to change circle-map to C++ version?
#66
panxiaoguang
opened
5 months ago
2
make --input_format a required argument when running local command line
#65
jluebeck
closed
5 months ago
1
Pipeline Release Version 1.1.0
#64
DSchreyer
closed
4 months ago
2
Important! Template update for nf-core/tools v2.11.1
#63
nf-core-bot
closed
5 months ago
1
Important! Template update for nf-core/tools v2.11
#62
nf-core-bot
closed
6 months ago
1
Important! Template update for nf-core/tools v2.10
#61
nf-core-bot
closed
6 months ago
1
ERROR ~ Argument of `file` function cannot be null
#60
tjbencomo
closed
11 months ago
3
Important! Template update for nf-core/tools v2.9
#59
nf-core-bot
closed
9 months ago
1
Quick Version Release 1.0.4 - Pipeline issue arose in 1.0.3 where only one sample was processed
#58
DSchreyer
closed
1 year ago
1
Quick Version Release 1.0.4 - Pipeline issue arose in 1.0.3 where only one sample was processed
#57
DSchreyer
closed
1 year ago
2
Pipeline Relase Version 1.0.4
#56
DSchreyer
closed
5 months ago
1
Minor fixes for GitHub Action workflow to build + push Docker image
#55
ewels
closed
1 year ago
3
Circexplorer2 Annotate
#54
uretaj
opened
1 year ago
1
Important! Template update for nf-core/tools v2.8
#53
nf-core-bot
closed
1 year ago
2
AmpliconArchitect should use AmpliconSuite-pipeline as mode of entry
#52
jluebeck
closed
5 months ago
8
v.1.0.3 - Minor release containing template and documentation updates plus PrepareAA Docker build needed for next release
#51
DSchreyer
closed
1 year ago
6
AmpliconArchitect related paths must be absolute not relative
#50
SPPearce
closed
1 year ago
2
Make bam marking duplicates optional when bams are provided
#49
SPPearce
closed
1 year ago
1
Update CITATIONS.md
#48
jluebeck
closed
1 year ago
1
No validation of --input_format
#47
lasseringstedmark
closed
1 year ago
2
nf-core/circdna update to v1.0.2
#46
DSchreyer
closed
1 year ago
2
genome.fa: No such file or directory
#45
ShixiangWang
closed
1 year ago
4
bwa index not working
#44
ShixiangWang
closed
1 year ago
3
Important! Template update for nf-core/tools v2.7.2
#43
nf-core-bot
closed
1 year ago
0
reference_build parameter doesn't accept 'mm10' as input
#42
ipstone
closed
1 year ago
3
Access Denied for Amazon S3 download
#41
ipstone
closed
1 year ago
3
error in NFCORE_CIRCDNA:CIRCDNA:CUSTOM_DUMPSOFTWAREVERSIONS (1)
#40
ipstone
closed
1 year ago
2
CNVKIT_BATCH fails
#39
paulemnah
closed
1 year ago
4
Important! Template update for nf-core/tools v2.7.1
#38
nf-core-bot
closed
1 year ago
1
Error executing process > 'NFCORE_CIRCDNA:CIRCDNA:SAMTOOLS_SORT_QNAME_CF
#37
liu-zhiyang
closed
1 year ago
4
Important! Template update for nf-core/tools v2.6
#36
nf-core-bot
closed
1 year ago
1
Test run fails with singularity `-r 1.0.1`
#35
madagiurgiu25
closed
1 year ago
9
Latest default circdna version is 1.0.0 and not 1.0.1
#34
madagiurgiu25
closed
1 year ago
2
Important! Template update for nf-core/tools v2.5.1
#33
nf-core-bot
closed
1 year ago
1
Important! Template update for nf-core/tools v2.5
#32
nf-core-bot
closed
1 year ago
2
Version 1.0.1 - Minor Updates on documentation and bug fix of version
#31
DSchreyer
closed
2 years ago
1
Dev1.0.1 - Minor Updates on documentation and bug fix of version
#30
DSchreyer
closed
2 years ago
2
Bug in line 214 of the nextflow.config file
#29
daianna21
closed
2 years ago
3
Merge Dev to Master - nf-core/circdna Version 1.0
#28
DSchreyer
closed
2 years ago
3
External DEV to nf-core/circdna dev PR
#27
apeltzer
closed
2 years ago
1
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