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![Screenshot 2023-12-18 at 4 14 41 PM](https://github.com/galaxyproject/galaxy/assets/1814954/6a49ffe4-ef0e-4bab-a15d-a3413730c53f)
I expect this to be a distinct issue from https://github.com/gala…
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the error i am getting is here:
./autoadapt.pl --minimum-length=16 MiR1_NoIndex_L006_R1_001.fasta mir184_trim.fa
> /home/ubuntu/softwares/autoadapt-master/tools/fastqc --threads 1 --outdir /home/ubun…
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Hi, I recently ran fastp on an Illumina dataset with the following command:
fastp -i SRR18278237.fastq.gz -o SRR18278237.fastp.gz -z 9 -l 15 -w 16 --dedup --dup_calc_accuracy 6 -x -3 --cut_mean_quali…
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**Is your feature request related to a problem? Please describe.**
I'm trying to support FastQC-style sequence content plots in a way that is easier to maintain and replicate across multiple modules.…
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Hi rMATS team,
I would like to apply rMATS on our recent RNA-seq data. During QC check of the fastq files using FastQC, I see a high level of sequence duplication (please see the attached fig). Do …
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Hi @Hoohm
I am using the dropSeqPipe v0.4 and have installed snakemake using conda on custom directory. When I execute the pipeline, I am getting below error with fastqc.smk. Can you please let me…
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Hi! Probably doing something wrong here, but left bug in title just-in-case :)
**The Error**
```
--------------------------------------------------------------------
ERROR ~ Required parameter…
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Hi,
I downloaded fastqc, but I have a problem when running it.
There is a black window with only the QC icon appearing after that.
P/S: I'm using openjdk version 17.0.8 to run FastQC.
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**Snakemake version**
8.10.0
snakemake-wrappers version : "v3.7.0/bio/multiqc"
**Describe the bug**
So, I have a bigger project, where in the end, I run multqc on reports generated by other …