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Dear FracMinHash team,
I am wondering the scaled sketch approach in FracMinHash is a metric operation, meaning, is FracMinHash (A, B) the same with FracMinHash (B, A), or FracMinHash (A, B) + FracM…
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Hello Jim,
In the main paper you compare skani with Mash, but not bindash, another important breakthrough of MinHash based on B-bit One Permutation MinHash with optimal densification (http://procee…
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Hello Jim,
I ran an all versus all test for a collection of genomes we often use to test ANI calculators, not very much, a total of 300 genomes, spanning several genus in phylum actinobacteria phyl…
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Hello Jim,
Another question about skani,which happens to be the weakness of FastANI, very abundant kmers when anchoring,will be filtered for fastANI. This is ok for prokaryotes because nearly all gen…
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Hello Wei,
Any guidance to install/compiling from source? I have an aarch64 (or ARM) CPU cluster and need to compile from source. None of the binaries works.
Thanks,
Jianshu
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I've noticed that sourmash requires the scale to be >= 100, but at times (especially for testing purposes) it would be handy to set a scaled=1. Is there a technical limitation or other rational of why…
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ref https://github.com/sourmash-bio/sourmash/issues/1652, you want to be able to sketch certain ksizes/moltypes for certain identifiers only, but on a large scale. how can we best do this?