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## Tasks
1. all PCGs BLAST all-vs-all search - diamond.py
2. gene sets construction
3. real alignments to respective sample contigs specific to gene coordinates
4. module detection of coverage-c…
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Legacy Bug ID: 1655
Author: Scott
Date: 2013-02-27 12:21:54 +0000 UTC
STEP 1: PROPOSAL
Short description of the concept or proposed improvements (describe the problem):
APSIM wheat flowering time …
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To answer biological questions downstream of analysis, we want to compare ribosome profiles to features of the genes. Some of these (e.g. codon composition, ORF length) we can calculated directly from…
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Sorry, I am new to IQ-Tree. I am running IQ-Tree in Conda using a simple default mode but I get the warning for 7169 of my sequences. However, the analysis runs perfectly after the warning. I did the …
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Hi,
For NucSeq data I would expect that mitochodrial genes are to a large extend caused by ambient RNA and in previous versions they have been removed well for most samples. However, in v0.3 this i…
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It is important to use the updated estimates of cell **type** compositions in the output for better results. However, would the package also provide updated estimates of cell **state** composition ?
…
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Hello,
I have managed to run metacoag on 9/10 flye-based nanopore assemblies, but I get the following error on one of my samples:
Is it maybe related to the low number of contigs with marker genes…
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I am noting several cases where KPs/ARAs creating qualified edges seem to not be fully populating all qualifier fields necessary to explicitly capture the full semantics of an edge.
e.g. this qua…
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I want to investigate HGT among an eukaryote and two of its symbiont bacteria (all pairs:: EK-bacteria1, EK-bacteria2, bacteria1-bacteria2). Is it possible to use your pipeline for this purpose?
Th…
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The visualization of observation metadata seems to be limited to taxonomic information.
The wiki (https://github.com/PitchInteractiveInc/Phinch/wiki/Visualization-Gallery#taxonomy-bar-chart) suggests …
iimog updated
8 years ago