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metagentools
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MetaCoAG
🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs
https://metacoag.readthedocs.io/en/stable/
GNU General Public License v3.0
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MAINT: first effort at porting to use cogent3 for formatting
#47
GavinHuttley
closed
3 weeks ago
0
DEV: port to use cogent3 sequence parsing / writing
#46
GavinHuttley
opened
1 month ago
1
UnboundLocalError: local variable 'my_matching' referenced before assignment
#45
franciscozorrilla
opened
2 months ago
1
coverage across multiple samples for binning
#44
franciscozorrilla
opened
2 months ago
1
Cannot find FragGeneScan
#43
bheimbu
closed
1 month ago
2
KeyError contig_4488
#42
ZarulHanifah
opened
3 months ago
2
ENH: MPI support to run multiple samples at once
#41
Vini2
opened
6 months ago
0
DOC: Update README.md
#40
Vini2
closed
8 months ago
0
REL: Create pypi-publish.yml
#39
Vini2
closed
11 months ago
0
Change python-igraph to igraph
#38
Vini2
closed
12 months ago
0
Error while running MetaCoag; wrong hmm file location?
#37
ZarulHanifah
closed
12 months ago
3
Explain output
#36
Vini2
closed
11 months ago
0
About HMM
#35
Andyargueasae
closed
1 year ago
2
Merge pull request #33 from metagentools/develop
#34
Vini2
closed
1 year ago
0
GIT: Merge develop to master
#33
Vini2
closed
1 year ago
0
KeyError: 'Contig'
#32
htaohan
closed
1 month ago
2
Is process hanging or will it just take a while?
#31
nmb85
closed
1 month ago
6
contig2fastg
#30
Rahimlou
closed
1 year ago
3
Raise exception if FragGeneScan and HMMER are not installed
#28
Vini2
closed
1 year ago
0
ENH: Add support to input depth file from MetaBAT2
#27
Vini2
opened
1 year ago
0
Replace argparse with click
#26
Vini2
closed
1 year ago
0
Validate args.paths check for Flye input
#25
Vini2
closed
1 year ago
0
Merge pull request #23 from metagentools/develop
#24
Vini2
closed
2 years ago
0
Merge changes in develop to master
#23
Vini2
closed
2 years ago
0
DEV: update requirements.txt
#22
Vini2
closed
2 years ago
0
Exit gracefully
#21
pbelmann
closed
2 years ago
1
question of megahit
#20
yuyuyu-fy
opened
2 years ago
6
Setup testing suit and CI
#19
Vini2
closed
2 years ago
1
Move documentation to Read the Docs
#18
Vini2
closed
1 year ago
1
question about using fastg2fga with metaspades
#17
esraagithub
closed
1 year ago
4
[Feature request] Make conda installable
#16
jolespin
closed
1 year ago
5
Question about using MEGAHIT assembly
#15
jarrodscott
closed
2 years ago
2
Extremely long file write times
#14
GabeAl
closed
2 years ago
1
Add functionality to output contig/scaffolds_to_bin.tsv file
#13
Vini2
closed
2 years ago
0
Dataset query
#12
mant-ux
closed
2 years ago
3
Add fraggenescan and hmmer to conda environment
#11
Vini2
closed
2 years ago
1
1
#10
mant-ux
closed
2 years ago
0
KeyError: 'N' in mer2bits
#8
krutkinam
closed
2 years ago
3
Question about output pickle file
#7
jdwinkler-lanzatech
closed
2 years ago
2
Using results from metaSPAdes
#6
jhCha1994
closed
2 years ago
2
Computing abundance TSV
#5
jdwinkler-lanzatech
closed
2 years ago
4
Speed up writing final bins
#4
chassenr
closed
2 years ago
4
keyError in get_cov_len_megahit
#3
jamesabbott
closed
2 years ago
14
Question: graph input for polished flye assembly
#2
ZarulHanifah
closed
1 year ago
7
[Feature Request] Custom marker sets as an argument
#1
jolespin
closed
1 year ago
9