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Currently, I believe, evidence for a disease term A and its children terms B and C or grandchildren terms D and E are considered equally when calculating the target score for disease A. This means tha…
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A few times in the Schemas, a gene is mentioned, and it is implied the HGNC name is used, however it is not explicitly stated. I, and I think others, are not especially confident in using HGNC names a…
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Oberved
For example, in file
/rap/nne-790-ab/projects/FR-MicrobiomeSinges/20130215_nofail/RayMeta_Sample_JE1/BiologicalAbundances/_GeneOntology/biological_process.Depth=1.tsv
# Identifier Name …
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Estimada comunidad de ciencia computacional, buenas tardes a todos.
Como les comentaba el día de ayer, he estado teniendo problemas para poder desarrollar un GSVA en R.
Recién comencé en el áre…
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Hello,
This is a bit of strange issue within CARD currently that causes issues sorting the genes in a downstream analysis and necessitates a lot of intervention.
Drug classes are inconsistently …
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the new versions of Trinotate include separated GO term columns called "gene_ontology_BLASTX", "gene_ontology_BLASTP" and "gene_ontology_Pfam" so that the split_GO function doesn't work anymore. Could…
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On the 2024-08-26 ontology call we discussed how we'd like to represent gene products that function as molecular sensors.
Here are some of the relevant points we touched on:
1. Gene products are…
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Hello,
For this package to be useful I think a basic feature is to include a function that directly imports files from the gene ontology resource (www.pantherdb.org). Since this tool is widely used b…
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When Bionetworks provide Tier 1 metadata for CxG we should be able to create DCP spreadsheets that have their Tier 1 fields populated. We will need that for:
- populating projects that are not current…
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Model organisms, especially the laboratory mouse Mus musculus, provide useful knowledge about human diseases. I am studying human gene-HPO term annotations and want to utilize phenotype annotations of…