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A demonstration of a commonly used Ontology such as the Gene Ontology would help people to get started.
Perhaps this would take the form of a How To wiki page?
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### Report
`ln.Curator.from_anndata` matches wrong gene symbols. For an AnnData object where the var index are just integers, the Curator matches `SCARNA10 ` and `EGR1 `. Which is a bit odd as the ge…
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# Context
There are emerging requirements for reusing the `cellxgene-schema CLI`schema+validator for scenarios that are more **relaxed** than CELLxGENE Discover's current requirements.
# Relaxat…
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Currently the data is text only, needs links to match the format of the current gene summary page.
Example: http://dictybase.org/gene/DDB_G0288511
Every annotation in that panel links to a local…
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Hello,
I cannot find those references either in the ontology or in annotations. Can we delete them ?
GO_REF ID | Description
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GO_REF:0000006 | Gene Ontology annotation by the MGI cu…
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Hello gggenomes folks.
I am currently attempting to run your program on my dataset that are subsections of:
1. A Nucleotide Fasta file- a portion of my chromosome JAEVHH010000002.1 from length 609…
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Pathway: oxidative phosphorylation (GO:0006119)
Complete gene set https://www.pombase.org/term/GO:0006119
The model is missing the
proton-transporting ATP synthase complex (GO:0045259)/
prot…
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The request from @suzialeksander is to make a list of all "external" linked pages documentation pages referenced on the site. As a simplifying assumption, if it's not "internal", it will need a full U…
kltm updated
4 months ago
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Mappings are available for both UniRef90 and UniRef50 gene families to the following systems:
MetaCyc Reactions
KEGG Orthogroups (KOs)
Pfam domains
Level-4 enzyme commission (EC) categories
E…