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**Describe the bug**
For some datasets where ResFinder ran on the raw reads report blaVIM beta lactamase resistance genes, there is no report of VIM genes at all in microSALT.
KS reports:
> För…
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Between topology optimisation, want to optimise the rate matrix parameters.
Ultimately we want:
- GTR model for SNPs
- Fast binary rate for genes (MGEs etc)
- Slow binary rate for other accessor…
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Related to https://github.com/opentargets/issues/issues/3500.
As discussed before we should select a list of gene-EFO pairs for additional validation of resulting L2Gs. These out-of-sample effector ge…
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Hi Gerry,
I get that Panstripe's main goal is to model the gene exchange rates, but would it be straightforward to get an idea of the function of the exchanged genes? I'm thinking of listing annota…
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Hello again
Presumably it was an intentional decision, but it's inconvenient having to always use, for example, ```AbstractFBCModels.genes()``` when using model accessors, instead of just ```genes(…
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Hi, I'm looking to predict genes for my insect genome. For most genes the prediction is working out good, but egapx is missing predictions for some species specific, single exon genes (experiementally…
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Preserve similar functionality from maftools::gisticChromPlot -- label cytobands instead of (or with) genes.
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Trying to create a new variant VHL S139C (c.416C>G) to change this variant into a complex MP https://civicdb.org/variants/4245/summary But type ahead won't let me pick VHL.
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The following table lists all the genes in curation sessions that aren't used in any annotations. The table was generated by a script that searches the PHI-Canto JSON export. It's up to date as of 1 D…
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