morinlab GAMBLR.viz issues

morinlab / GAMBLR.viz

Collection of functions to make plots for Genomic Analysis of Mature B-cell Lymphomas in R

https://morinlab.github.io/GAMBLR.viz/

MIT License

0 stars 0 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

bug fix: handling of custom colors for numeric annotations

#63 Kdreval opened 2 weeks ago
0
handling of custom colors for numeric annotations

#62 Kdreval opened 2 weeks ago
1
Put ashm_multi_rainbow_plot where it works

#61 rdmorin opened 2 months ago
0
Remove ssm_to_proteinpaint (moved to GAMBLR.utils)

#60 vladimirsouza closed 3 months ago
0
Addressing README and prettyOncoplot issues

#59 Kdreval closed 3 months ago
1
`prettyOncoplot` bugs

#58 Kdreval closed 3 months ago
0
README needs update

#57 Kdreval closed 3 months ago
0
Develop ggplot2-implemented lollipop plots

#56 Kdreval opened 3 months ago
0
Dependency cleanup and setting up actions

#55 Kdreval closed 3 months ago
0
drop plotly dependency

#54 Kdreval closed 3 months ago
0
drop cowplot dependency

#53 Kdreval closed 3 months ago
0
drop reshape2 dependency

#52 Kdreval closed 3 months ago
0
setup github actions for this package

#51 Kdreval closed 3 months ago
0
Ensure viz passes the devtools check

#50 Kdreval closed 3 months ago
1
error in `prettyCoOncoplot`

#49 Kdreval closed 3 months ago
1
Website/tutorials for GAMBLR.viz

#48 Kdreval closed 3 months ago
1
Bug fix: Dropping samples with NA values in metadataColumns

#47 lkhilton closed 3 months ago
0
`prettyOncoplot` is missing a step to assign POS/NEG colours

#46 lkhilton closed 4 months ago
7
Error in `prettyOncoplot`

#45 vladimirsouza closed 4 months ago
1
Bug fixes

#44 Kdreval closed 4 months ago
2
`heatmap_mutation_frequency_bin` lost rotation of the column title

#43 Kdreval closed 4 months ago
1
Add internal call to prettyOncoplot to convert NA metadata values to literal "NA" string

#42 Kdreval closed 4 months ago
5
`heatmap_mutation_frequency_bin` shows pathology even when not specified

#41 kmcoyle closed 3 months ago
1
cleanup: remnants of ggsci cleanup

#40 Kdreval closed 5 months ago
0
remove ggsci dependency from Description

#39 rdmorin closed 4 months ago
1
remove ggsci requirement

#38 rdmorin closed 5 months ago
0
bug fix: resolve function conflicts

#37 Kdreval closed 5 months ago
2
bug fix: keep only relevant annotations in prettyOncoplot

#36 Kdreval closed 5 months ago
0
The annotation shows values not present in the data

#35 Kdreval closed 5 months ago
1
Fixed bug & added hg38 compatibility

#34 kmcoyle closed 5 months ago
0
bug fix: add source to desctiption

#33 Kdreval closed 5 months ago
0
ashm_multi_rainbow_plot doesn't have option for genome projection

#32 kmcoyle closed 5 months ago
1
cleanup: define dependency usage place and avoid import conflicts

#31 Kdreval closed 6 months ago
0
pr transfer: prettyRainfallPlot update

#30 Kdreval closed 6 months ago
5
Resolving GAMBLR.viz issues

#29 Kdreval closed 6 months ago
4
hide_annotations still shows metadata track in prettyOncoplot

#28 Kdreval closed 6 months ago
2
keepSampleOrder in prettyOncoplot is ignored

#27 Kdreval closed 6 months ago
1
PrettyRainFallPlot Improvements

#26 mattssca closed 7 months ago
0
Fix function code and examples

#25 vladimirsouza closed 6 months ago
3
`prettyCoOncoplot` isn't supported by `prettyOncoplot` after maftools dependency has been removed from the latter

#24 vladimirsouza closed 6 months ago
2
Parameters missing in `GAMBLR.data::calc_mutation_frequency_bin_regions`

#23 vladimirsouza opened 7 months ago
0
Fancy Plot Updates

#22 mattssca closed 7 months ago
11
Add ssm_to_proteinpaint function

#21 vladimirsouza closed 6 months ago
2
`heatmap_mutation_frequency_bin` is not used in its examples

#20 vladimirsouza opened 7 months ago
1
Function import tags vs. in-code package prefixing

#19 mattssca opened 7 months ago
1
`fancy_v_count` doesn't work when GAMBLR.results is loaded

#18 vladimirsouza closed 7 months ago
2
Switching from maftools dependency to GAMBLR.helpers in prettyOncoplot

#17 Kdreval closed 7 months ago
2
Optionally use raw SVs in prettyRainfallPlot

#16 Kdreval closed 6 months ago
2
prettyRainfallPlot does not respect the projection whet returning SVs

#15 Kdreval closed 7 months ago
1
`fancy_propcov_plot` returns warning message

#14 vladimirsouza closed 7 months ago
1