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Hi Bjarni,
Thank you for developing and for continuing to improve LDpred.
I was experimenting with the `--gm_ld_radius` option of `coord_genotypes.py` after interpolating the genetic map of my L…
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**Tool Details**
- Name of tool: annovar
- Tool homepage: http://annovar.openbioinformatics.org/en/latest/
- Tool description: ANNOVAR is an efficient software tool to utilize update-to-date inf…
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> Millions of human genomes and exomes have been sequenced, but their clinical applications remain limited due to the difficulty of distinguishing disease-causing mutations from benign genetic variati…
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[InStrain enables population genomic analysis from metagenomic data and rigorous detection of identical microbial strains](https://www.biorxiv.org/content/10.1101/2020.01.22.915579v1)
Coexisting mi…
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Hello, I tried to run your tool but come up with the following error.
Could you help me to solve this problem?
Thank you.
______________________________________________________________________…
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Hi hardingnj,
Thank you for your exellent work.
But I wonder if I can use the vcf file as input and use the genetic map at the same time. So that I can sliding window based on genetic map to cal…
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https://doi.org/10.1101/092890
> Next-generation sequencing (NGS) is a rapidly evolving set of technologies that can be used to determine the sequence of an individual's genome by calling genetic v…
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Hello,
I see that LUMPY is coming from the same lab as GEMINI, so I was wondering if there is a workflow for running annotating and filtering variants called by LUMPY.
Ideally, the pipeline would …
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RefSeq does not have MT transcripts, but Ensembl does, eg [ENST00000361381.2](https://grch37.ensembl.org/Homo_sapiens/Transcript/Summary?g=ENSG00000198886;r=MT:10760-12137;t=ENST00000361381)
There …
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Hello! I'm new to SHAPEIT and am trying to use it to phase my array data.
Initially I installed SHAPEIT5 from [conda](https://bioconda.github.io/recipes/shapeit5/README.html) on a docker image and…