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Hi,
I want to run cactus graphmap and I keep running into problems. I did the GFA input in minigraph (https://github.com/lh3/minigraph) and I thought it should be able to work within cactus graphma…
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We've used version 1 of the CG IG in the past, updated our Variant profile (defaulted to upstream) but there are other profiles to clean up such as PhenopacketsGenomicInterpretation and possibly other…
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Hi,
Thank you for your excellent work on the SAE package. I am interested in training Sparse Autoencoders (SAEs) on my own model(LLM in Genomics), which is not included in TransformerLens. Could you …
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Thank you for the great method!
Regarding this algorithm, I'd like to ask whether it is suitable for spatial transcriptomic dataset, such as 10x Genomics Spatial Transcriptomics. If applicable, do …
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pan.genomics.cn alwasy throw exception as `{"body":{"bean":null,"custom":{},"pageNumber":0,"pageSize":0,"rows":[],"total":0},"clientId":"","code":400,"msg":"exception_in_readAndWrite_file","notes":""}…
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Both with the 100+100 swegen and 100+100 CG local wgs samples, variance on chromosome X log2 ratio for coverage probes is high to the detriment of analysis. The curve appears much more sparse compared…
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the count seems wrong?
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Hi, I'm trying to use your tool LEMON to establish a pipeline for HGT detection as it looks very promising. Unfortunately I'm not able to complete the installation as I encounter an error in the "make…
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Hi! I'm brand new to using immunarch and am preparing to use it to analyze some cellranger vdj data from 10x genomics. I was a little confused in the "Loading 10x Genomics Data" vignette, because orig…
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- https://github.com/ESR-NZ/human_genomics_pipeline/tree/master
- https://www.delltechnologies.com/asset/en-us/products/ready-solutions/industry-market/parabricks-architecture.pdf