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KP.3.3+G15540T+A22019G(S:M153V)
GISAID query: C15540T, A22019G,G28884
No. of seqs: 30(USA 26 Canada 4)
First: EPI_ISL_19245238, USA-MN, 2024-6-17
Latest: EPI_ISL_19340107, Canada, 2024-7-30
…
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We at Colorado are testing different primers and are interested in knowing what references were picked for RSV-A and RSV-B. If you have it, could you provide us with a GISAID, GenBank, or other ID?
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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/1568
KP.2.2+A28468G(Orf9b:N62S)
GISAID query: A28468G,T21737C,A25359G
No. of seqs: 151(Canada 6 UK 6 Finland 5 France 65 Frenc…
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KP.3.3.1+G15543T+C21998A(S:H146N)
GISAID query: C21998A, G15543T,C23202A
No. of seqs: 13(USA 2(1 from Turkey) Japan 1 South Korea 10)
First: EPI_ISL_19273059, South Korea, 2024-6-21
Latest: EP…
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KP.2.3(with 31del)+C28714T+C25611T+C21762T(S:A67V)
GISAID query: C28714T,C25611T, C21762T, C22000A
No. of seqs: 38(Japan 3 UK 1 USA 34)
First: EPI_ISL_19190612, 2024-4-11, Japan
Latest: EPI_IS…
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We have a single case where public dataset (`data://garden/covid/latest/combined` and hence our full covid dataset) depends on private dataset `data-private://garden/covid/latest/sequence`.
```
data…
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Any suggestion how to get GISAID_FEED?
Thanks.
Shicheng
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LF.8.1.1+A22994G(S:K478E)
GISAID query: A22994G,C9169T, C21654T
No. of seqs: 4(USA 3(1 from Iceland 1 from India) Japan 1(from India))
First: EPI_ISL_19241028, 2024-6-22, USA from India
Latest…
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KS.1.1+A1674C, G5180A,G22132T(Orf1a:N470T,D1639N,S:R190S)
GISAID query: G22132T,A1674C
No. of seqs: 6( Russia 1 USA 5(2 from Turkey))
First: EPI_ISL_19347169, 2024-7-30, USA
Latest: EPI_ISL_19…
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Dear @TheSatoLab,
Could you please upload the "merged.final.tsv" and 'final.metadata.filtered.tsv' files, thanks.