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Hi, I am on Chapter VI-Data Sources - Downloading complete genomes.
The following command from "Get the GTF file" is not working: `gunzip hg38.knownGene.gtf.gz`
It says its `not in gzip format`.
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Sometimes curl over ftp of the GRCh38 reference fasta file from NCBI results in a file with a small corruption that prevents gunzip from unzipping the file. While it isn't totally silent this isn't ob…
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- [ ] [brotli](https://nodejs.org/api/zlib.html#class-zlibbrotlidecompress)
- [x] [bzip2](https://github.com/regular/unbzip2-stream)
- [x] unzip (not the [Node.js native](https://nodejs.org/api/zlib…
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testing 1.1.7 as "system wide installed" on a debian system (sorry for a wide display) lead to
```
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**Describe the bug**
I am analyzing data from plant (cherry) samples hoping to determine viral quasispecies of Little Cherry Virus
I set up my v-pipe workflow based on the sars-cov2 tutorial
Howeve…
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Gunzip succeeds but displays `decompression OK, trailing garbage ignored` and returns `2`.
`-q` silences the warning: http://www.gzip.org/#faq8 but does not make it return `0`.
(URL: ftp://ftp.1000g…
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I do not disagree with the descriptor "shambolic" - that said, I think the output format has changed, or I'm not understanding what https://github.com/dcjones/proseg/blob/main/extra/stitch-cosmx.jl is…
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some processes that use them can take gzipped input, for others we'll have to gunzip them within the process
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This could be my fault because I don't know anything about javascript but it looks like the chunks don't get garbage collected. I got this far:
```
var drop = require('drag-and-drop-files')
var conc…
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perl 5.14.2
IO::Uncompress::Gunzip 2.206
AIX 7300-02-02-2420
At our end it happens randomly that timing out this function
```
sub _gunzip_file {
my ( $filename ) = @_;
my $gunzip…
XSven updated
23 hours ago