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Add 7316-1106 and 7316-3000 back to hope subcohort, except for proteomics. Use the attached file from Pei.
[master_11032023 (1).txt](https://github.com/user-attachments/files/15892642/master_11032023…
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Hi! I discovered your repository and preprint since I was looking for a way to align Nissl stained histology pictures to each other. My goal is to align the image on the right (see figure below) to th…
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As mentioned in the title, `colorectal_histology` is terminated while both `cifar10` and `fashion-mnist` work.
It seems only `colorectal_histology` requires 16+GB RAM in loading the surrogate benchma…
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Hi!
I'm trying to reproduce the tutorial's example.
But got this error when tried to call this function "SpaGCN.calculate_adj_matrix()"
It seems that function name was changed.
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Hi Andrew,
Sorry to bother you again. I am curious about whether it is possible to integrate the output of deepslice to initiate the atlas plane for the corresponding histology images in AP_grab_hi…
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Hi author:
I downloaded the ST datasets from the paper 'Berglund, E. et al. Spatial maps of prostate cancer transcriptomes reveal an unexplored landscape of heterogeneity. Nat. Commun. 9, 2419 (2…
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Survival analysis (Cox regression and ggforest plot)
- 25 different tumors and no cancers
- PTV burden as a continuous variable
- Variables in the Cox models: sex, ethnic group, PCA1-10, PTV burd…
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http://onlinelibrary.wiley.com/doi/10.1002/cne.24080/abstract
it does not seem to be online yet, so let's put it in queue,
and see what happens when we get to it.
@kunallillaney @Aeusman @perlman @…
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Great work, I have run the `run_demo.sh` successfully. But when I want to reproduce some result displayed in the paper, I found the raw histology image used in the demo is not matched in any histology…
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Dr. Updike mentioned that he would want his physicians to know that they need to look at the guidelines if this result is positive and there is no additional histologic results documented. What we don…