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Processes and gene lists are collected from GO terms.
10 processes:
1. antigen processing and presentation (24 genes)
2. antigen processing and presentation of endogenous peptide antigen via MHC …
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_Issue [HLA-1325](https://jira.stsci.edu/browse/HLA-1325) was created on JIRA by [Steve Goldman](https://jira.stsci.edu/secure/ViewProfile.jspa?name=sgoldman):_
Found when testing HLA-1271:
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I have downloaded and installed soap-hla without error using conda but i have errors when i try to run:
```
$ MHC_autopipeline
syntax error at /opt/conda/envs/soap-hla/bin/MHC_autopipeline line 62…
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Redirected all statics using tr_ex_narsis_ models to use renamed tr_ex_hla_ equivalents.
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Dear Sirs,
I am trying to make HLA Genotyping for HLA-A, HLA-B, HLA-C, HLA-DRB1, HLA-DRB2 and HLA-DQA1. Please tell me where can I find the HLA reference files in VCF format, as it is required for …
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Hi, thanks for sharing this repo.
I have encountered a bug where I get different results depending on the order in which I parse two names. Specifically, I would like to parse:
`DPB10401` -> `HL…
ghost updated
3 months ago
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Hello!
Thank you for creating a great pipeline for assessing HLA imputation accuracy. I am planning to use HIBAG for imputing Sudanese genomes. Where I could obtain HLA_Type_Table for individuals o…
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When I installed arcasHLA through conda and ran the code, the following error occurred.
`(JS) seokjune@workstation:~/JSP$ arcasHLA genotype -t 8 -o arcas_RE-P220-T --log log.arcas_RE-P220-T.txt /ho…
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Hi,cliu32
After i updata hla database to 3.46, I met an error "err: process_block: block size != refs size" when i use athlates typing function. I try some times and still get this error.
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Hi,
I am running into an issue with the HLA typing that I cannot figure out. The program fails with the message:
Traceback (most recent call last):
File "bin/optitype_ext.py", line 31, in
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