andyrimmer Platypus issues

andyrimmer / Platypus

Platypus Variant Caller

GNU General Public License v3.0

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issues

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Now supported in Python 3

#94 coolbablader opened 9 months ago
0
How to use Platypus on RNA-Seq data?

#93 Wulei26 opened 1 year ago
0
Segmentation fault when running Platypus

#92 ivargr opened 3 years ago
0
Ploidy

#91 michaeljmetzger opened 4 years ago
2
Issue with Platypus when called in for optimization

#90 ahmadmomenie opened 4 years ago
0
callVariants problem with hg38 aligned bams

#89 CPTPaso opened 4 years ago
1
Fix inline function declarations

#88 gtamazian closed 1 year ago
0
Filtering germline variants

#87 dollinad opened 4 years ago
0
Platypus input from .csi indexed BAMs

#86 MaximilianStammnitz closed 4 years ago
1
variant calling parameters

#85 aakanapin opened 4 years ago
0
continueCalling error

#84 dhwani2410 opened 5 years ago
0
continueCalling parsing problem

#83 marqueda opened 5 years ago
1
Platypus Variant Calling, Exception OverflowError

#82 TManning7 closed 1 year ago
2
Calculating BAF from Platypus VCF

#81 ilykos opened 5 years ago
0
Palindrome dependency not licensed

#80 LukeGoodsell opened 5 years ago
0
command 'x86_64-linux-gnu-gcc' failed. Compilation failed

#79 NVSmirnova opened 5 years ago
2
solved

#78 ghost closed 5 years ago
0
No module named Cython.Distutils

#77 alexanderlws closed 5 years ago
0
Can it call variants on tetraploid species?

#76 afzm closed 6 years ago
2
Deletion format

#75 Addicted-to-coding opened 6 years ago
0
empty output vcf file

#74 KamilSJaron opened 6 years ago
0
Error was value too large to convert to int

#73 anubhabkhan opened 6 years ago
4
Number entry in VCF header

#72 GuilhemSempere opened 7 years ago
2
genotype format

#71 GuilhemSempere opened 7 years ago
0
" python Platypus.py " gives me some error import runner, import variantcaller ..........

#70 anopperl opened 7 years ago
0
Merge multiple VCF files from multiple samples from Platypus

#69 wenbostar closed 4 years ago
2
platypus error when trying to merge VCF

#68 tdelhomme opened 7 years ago
1
Support parsing hg38 BAM files with @SQ AH fields

#67 chapmanb closed 7 years ago
1
BED end position should not be included

#66 tdelhomme opened 7 years ago
0
Added the three environment variables to the Makefile

#65 KevinSayers opened 7 years ago
0
Add an option for Platypus to exit if an error is encountered

#64 andyrimmer opened 7 years ago
0
Chromosome size in Platypus?

#63 dtorkamaneh opened 7 years ago
0
Installation issues.

#62 george-githinji closed 7 years ago
1
Interpretation of FORMAT/NR and FORMAT/NV for multiallelic sites

#61 holtgrewe opened 7 years ago
4
HLA Genotyping

#60 gavrilalucianionut opened 7 years ago
1
Cannot configure include and lib paths; defaults to system include and lib paths

#59 IvantheDugtrio opened 8 years ago
0
Improve `README.md`

#58 paulmenzel closed 8 years ago
0
Segmentation fault on multiple bam files

#57 HannahNieto opened 8 years ago
4
Increased number of variants with HapScore filter tag

#56 NagaComBio closed 8 years ago
2
Added preliminary PPC64 support

#55 IvantheDugtrio closed 8 years ago
0
Documentation on sanityChecks.py usage

#54 IvantheDugtrio opened 8 years ago
1
Compiling Platypus on POWER7

#53 IvantheDugtrio closed 8 years ago
1
Run-time error: cerrormodel.so: undefined symbol: min

#52 walaj opened 8 years ago
3
http://www.well.ox.ac.uk/platypus-paper-data is defunct

#51 walaj opened 8 years ago
0
HLA genotyping

#50 lmanchon opened 8 years ago
0
Simple clean up

#49 lachlansimpson opened 8 years ago
0
long deletion error messages

#48 ghost opened 8 years ago
0
Dockerizeit

#47 mattions closed 8 years ago
0
Best version to use?

#46 jjfarrell closed 8 years ago
1
Is there any way to set ploidy?

#45 noporpoise closed 8 years ago
1