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Hello,
I was looking through the given fasta files under data directory and noticed that some of the sequences provided in there are combinations of coding sequence and non-coding sequence.
What p…
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Hi,
in release 2.13.0 several partial introns have been added to KIR2D5A*00102 without changing the sequence.
In 2.12.0 there was only Intron 1 annotated and the length of features did match the p…
sklas updated
9 months ago
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Hi there,
When I run HATK on one dataset, the association output has only worked for SNPs with rsids.
The following error is displayed and no heatmaps are produced?
Do you know what could be causin…
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Hi,
I'm having an issue during crossdome installation:
**Input**
devtools::install_github("antuneslab/crossdome", build_vignettes = TRUE)
**Output**
Downloading GitHub repo antuneslab/cross…
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Context:
This mainly comes about because .NET Core 3 does not support Distributed Transactions: https://github.com/dotnet/runtime/issues/715
The DataRefresh code and the ongoing DonorUpdate code…
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Hi,
I'm wondering how I can make a `--quilt_hla_supplementary_info_file` for hg19. I guess I can liftOver the file provided in the Github repo, but I hope to add more genes, like `c('A','B','C','DPA1…
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### Submitter Name
Martin Maiers
### Submitter Affiliation
National Marrow Donor Program
### Submitter Github Handle
mmaiers_nmdp
### Additional Submitter Details
_No response_
### Which event…
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dhwani@dhwani-Precision-WorkStation-T7500:~/Documents/hla_scan/test_out/HLA-master/docker$ make build
docker build -t docker-dev.hli.io/xchao/hla-dev -f dev.dockerfile .
flag provided but not define…
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Hi,
Does you tool work with mm10 (mouse) data? As far as I know, NetMHCpan-4.0 permitts to work with it, but I did not find this possibility in your documentation.
Thanks
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Hi,
I have been trying to use HLA-LA for illumina standard WES data. Unfortunately, I'm running into a BWA error after the edge path generation:
```
[ Wed Jun 24 19:10:29 2020 ] extensionAlign…