humanlongevity HLA issues

humanlongevity / HLA

xHLA: Fast and accurate HLA typing from short read sequence data

Other

99 stars 51 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

cope with spaces in the s3 filename

#67 cariaso opened 9 months ago
0
Read length for xHLA

#66 serge2016 opened 10 months ago
1
serveral changes made, command line option for the number of cores to be used added

#65 jen-dev-basesolve closed 11 months ago
0
some questions about genome version

#64 milkcookie opened 1 year ago
2
HLA? Why I need to learn this?

#63 mikk1max opened 1 year ago
0
Error in fread(align.path) : File is empty: hla-SU-DIPG_24/SU-DIPG_24.tsv Execution halted

#62 hafizmtalha opened 1 year ago
0
test run failed to read file from test folder

#61 hafizmtalha opened 2 years ago
0
? discussion of output values ?

#60 DanWinder opened 2 years ago
0
Non human-readable error for test data SRR6000626

#59 serge2016 opened 2 years ago
0
Interpreting the result for matched T-N samples

#58 aditisk opened 3 years ago
0
Error: Error detecting input file format. First line seems to be blank.

#57 AlisaFbb opened 3 years ago
0
Option --full doesn't work correctly

#56 PKazakova opened 4 years ago
3
error in more$solution $ operator is invalid for atomic vectors

#55 alexvpickering opened 4 years ago
1
An irreproducibility of some results

#54 PKazakova opened 4 years ago
1
full resolution result strange

#53 xhy1219 opened 4 years ago
0
Python 3 support

#52 PKazakova opened 4 years ago
2
[E::bwa_idx_load_from_disk] fail to locate the index files when running

#51 NTNguyen13 opened 4 years ago
4
HLA Typing with 10X scRNAseq data (5' chemistry)

#50 Close-your-eyes closed 2 years ago
0
Why xHLA does not work for test.bam

#49 dulunar opened 4 years ago
1
Typing of DQA1 and DPA1

#48 memumab opened 4 years ago
1
problem when run get-reads-alt-unmap.sh

#47 Huangpq2019 opened 5 years ago
0
xHLA:for non-human samples

#46 Dharmendra-G-1 opened 5 years ago
0
Can I run xHLA without docker?

#45 Tiredbird opened 5 years ago
8
how to tun it in singularity environment?

#44 xhy1219 closed 4 years ago
1
the meaning in the full resolution result

#43 xhy1219 opened 5 years ago
0
cant perform non-core exons typing

#42 xhy1219 opened 5 years ago
0
how to use get-reads-alt-unmap via docker?

#41 xhy1219 opened 5 years ago
2
get-reads-alt-unmap.sh get "[bwt_restore_sa] SA-BWT inconsistency: primary is not the same. Abort!"

#40 yubau1112 opened 5 years ago
4
title

#39 yubau1112 closed 5 years ago
0
Script typing.r breaks

#38 abhisheknrl opened 5 years ago
5
xHLA invalid input file, /get-reads-alt-unmap.sh not working.

#37 gunyorka opened 5 years ago
4
Update README.md

#36 caot opened 5 years ago
0
run get-reads-alt-unmap.sh in container

#35 tmhmxg59 closed 5 years ago
3
Fail to type several HLA types

#34 BriannaGao closed 6 years ago
0
change from detectCores() to future::availableCores() in testing.r?

#33 wresch opened 6 years ago
0
Fail to run with test.bam file

#32 icymiktreize opened 6 years ago
7
Ability to specify max cpus

#31 keiranmraine opened 6 years ago
0
Can xHLA be used for HLA-typing using RNA-Seq data

#30 raunaq-m opened 6 years ago
2
Which GrCh38 reference file to use ?

#29 Krithika-Bhuvan opened 6 years ago
1
missing chr6.fna

#28 cjieming closed 6 years ago
1
issues with missing calls and accuracy

#27 cjieming closed 6 years ago
4
Error in dcast.data.table

#26 AngelinaSverchkova opened 6 years ago
0
run errors

#25 cjieming opened 6 years ago
5
novel alleles/confidence score/coverage

#24 afadda91 opened 6 years ago
0
samtools view: failed to open

#23 bwubb closed 6 years ago
1
Error message

#22 compbio opened 6 years ago
1
README for output

#21 cjieming opened 6 years ago
0
Cut ties to specific build?

#20 keiranmraine opened 6 years ago
3
Register tool in Dockstore?

#19 keiranmraine opened 6 years ago
0
I dont have any sudo permission on my institution's server, can I still install xHLA?

#18 cjieming closed 6 years ago
2