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Hi,
I got an error using the test reference table, any idea?
```
Protein alignment merging options
--------------------------------------------------
N_AlignmentMerging: 0
HHsuite_evalue_Cu…
housw updated
2 years ago
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I separated the MSA part and am doing it with ProtreinFold on CPU. After this I run AlphaFold on GPU with:
` --use_precomputed_msas=True`
Alphafold correctly identifies all jackhammer alignments b…
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``README.md`` does not say which versions of the PFAM database, HMMER tool, nor ``pfam_scan.pl `` script are used.
In particular, since they are not compatible, do you use HMMER 2 or 3? This in tur…
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I am currently trying to install OpenFold through the Anaconda command prompt, but I kept running into this issue when creating the environment:
PackagesNotFoundError: The following packages are n…
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When I try to run the script, i receive the error "GA bit thresholds unavailable on model COX4". How can this issue be fixed? (error appears both with version hmmer-3.3 and hmmer-3.3.2, hmmscan -h sho…
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[BLAST query page(submission page)]
link:
https://github.com/r06942072/frontend_BLASTquery
---
**Naming list of smart UI components**
- 4 blocks:
- yourQuery
- ourDb
- program
- ti…
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Hi , I downloaded AbNumber by conda, but when I used abnumber.Chain, I got the FileNotFoundError : No such file or directory: 'hmmscan'.
I tried to install the hmmer, but it didn't fix the error.
…
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using bio 1.4.2, ruby 1.9.3, OS X 10.7.4
``` ruby
require 'bio-hmmer3_report'
reportfile = ARGV[0]
report = Bio::HMMER::HMMER3::Report.new(File.open(reportfile))
report.hits.each do |hit|
#puts…
ghost updated
12 years ago
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# OGS remapping and manual annotations
- [ ] request whole-genome alignment
- [ ] Set up data directories and get data
- [ ] run remap-gff3
# Change old content
- [ ] back up and deprecate ol…
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Hi @linnabrown , @yinlabniu , @AaronAOliver
Thank you for a great resource! I am looking through the output of run_dbcan script and was wondering if you could guide me in the right direction. My o…