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https://github.com/icgc-argo/platform-api/issues/294
The tests pass locally but fail in CI (sometimes). Something about the test is unstable and needs to be fixed.
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Parameterizing container registry will allow us to customize container registry at pipeline execution time instead of hardcoding it at development time.
This will need to be implemented at each pro…
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- Pack in the exception into the field
- Do these need to be defined per field?
- Right now is failing because databse cant save it
1. Identify different types of errors (collisions, conflicts)
2. F…
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Since the Node/Edge Services are completed we need to test the viability of the pipeline connections. We wil hardcoded a pipeline and have it use all the services to verify that each piece is workin…
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Some context in https://github.com/icgc-argo/workflow-roadmap/issues/148
Here to improve the song/score retry mechanism by making the retry specifically retry on error codes that are not some given…
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## Detailed Description
We want to support these 2 use cases in RDPC portal:
1. As a RDPC admin, in the RDPC portal, i want to see a list of all **regional** programs when I log in.
- Make sure to…
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Draft copy in:
https://github.com/edsu7/nf-core-argogermline
payload branch:
https://github.com/icgc-argo-workflows/argo-modules/tree/germline_variant_payload
Once testing is done can be forked …
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## Goal
Build a static contact page, the page can be accessed by clicking on `Contact` in the footer.
Refer to existing argo platform contact page as example: https://platform.icgc-argo.org/contact
![…
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Example: "Dovitinib" and "Celastrol" do not exist in [RxNorm](https://mor.nlm.nih.gov/RxNav/).
Investigate:
- Whether drug exists in other drug databases. For example "Dovitinib" exists in other …
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### Description
If a program requests a sample be removed, we delete the sample information in clinical using the [Data Redaction SOP](https://wiki.oicr.on.ca/pages/viewpage.action?pageId=150638363).…