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### 🚀 The feature, motivation and pitch
The current implementation of Softmax and LogSoftmax for a K class output involves an [NxK] input tensor. This is over parameterized and leads to issues of ide…
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Hello!
I am developing Catalyst.jl (https://github.com/SciML/Catalyst.jl) for systems biology modelling. Likelihood profiles are used in Systems biology for practical identifiability analysis, and …
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**Is your feature request related to a problem? Please describe.**
Some projects use SMASCH to keep correspondence table. This dataset is identifiable and non-sensitive. DAISY does not have such clas…
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Consider using the individual, sample, metadata, and variant core APIs as templates for a genotype + phenotype query language.
For example, we can ask for information about alleles in a specific coho…
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When trying to setup a `deepregression::deepregression` model with one parameter per level of a `factor`, I ran into the problems illustrated below.
Running
```
library(deepregression)
set.se…
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This is a follow-up to #212, which ended up introducing too much visual noise to be workable. (Lots of rainbow links packed densely is never a good sign.)
An alternate, new listing would be very si…
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Extend the OCPBalance class to fit the half-cell datasets to a full cell measurement.
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I am performing the structural identifiability of a model and it gives me errors. Through debugging, I found that it is related to the Mat_index in genssiOrderTableau.m:
![image](https://user-image…
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In a structural equation modeling framework, we often define latent unmeasured variables with indicators. For example
```
library(lavaan)
data(PoliticalDemocracy)
mod |z|)
.x1 …
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Right now, separate function for perturb_spar, perturb_hnpi, etc, can all be combined into a single file to avoid redundancy and to make it easier to edit them.
Additionally, these should be updated…