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A lot of items in [Open Food Facts](https://openfoodfacts.org/) (OFF) lack a number of values (see, for example, [this notebook on kaggle][1], or [this notebook on github][2]). Oftentimes this is simp…
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Dear CIDR developers,
thanks for making CIDR freely available, it works great for me. I just have one small question:
Is it possible to extract the imputed count matrix / imputed gene expression?…
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target vcf:
![image](https://user-images.githubusercontent.com/120133000/222917525-4fd0045a-4402-4dc1-bc19-7b13fdfdfcd0.png)
imputed vcf:
![image](https://user-images.githubusercontent.com/12013300…
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Dear Authors,
Thank you for your invaluable contributions to this repository. I am currently exploring the field of time series imputation and have encountered some aspects regarding the evaluation…
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I tried using rMVP to do GWAS with my data, I must say I'm impressed by the speed and figures it makes as a standard output. Others in my lab tend to run GWAS without imputing missing data. Seems like…
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Hi,
Thank you for the nice tool. Is there any way to use ALRA in integrated data?. Currently if we use ALRA, it seems to be masking the difference in expression between treatment and control. One way…
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SSI disability status is currently based on SSI receipt. As a result, we will underestimate the impact of reforms that expand SSI eligibility, e.g. by income or assets. We could impute SSI disability …
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Try imputation methods. Follow [scikit-learn](https://scikit-learn.org/stable/modules/impute.html)
Missing features are
* `Car` 62
* `BuildingArea` 6450
* `YearBuilt` 5375
* `CouncilArea` 1369
Impu…
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Hi, I have a phenotype data with some missing value. And I found the Fastqtl will impute the issing phenotypes automatically. I wonder if it was imputed by the average value? And how can I avoid impu…
zmy24 updated
2 years ago
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Hi,
I'm using minimac4 v4.1.3 to impute genotypes on a cohort of about 24k individuals.
Usually, I run one imputation job per chromosome. When I run the command with mostly default settings, it …