KlugerLab ALRA issues - Githubissues

KlugerLab / ALRA

Imputation method for scRNA-seq based on low-rank approximation

MIT License

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issues

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Can ALRA make imputation on CPM data?

#31 Alvis-Jiang opened 1 month ago
0
In nrow(A_norm) * ncol(A_norm) : NAs produced by integer overflow

#30 haoqing12 opened 6 months ago
0
Large matrix errors (more than 2^31-1 non-zero entries) [on large datasets]

#29 ghost opened 8 months ago
3
Update alra.R

#28 Biomiha opened 11 months ago
0
marker genes not specific for cluster after imputation

#27 yamihn opened 11 months ago
0
help with alra

#26 mocherry opened 11 months ago
1
Which `selection.method` to use for FindingVariableFeatures on ALRA imputed data

#25 Rohit-Satyam opened 1 year ago
2
ALRAChooseKPlot throws error

#24 Rohit-Satyam opened 1 year ago
1
Turn ALRA into a package

#23 rcannood closed 1 year ago
3
Differential expression

#22 DzenisKoca opened 2 years ago
5
Running ALRA with multiple samples

#21 msraredon opened 2 years ago
11
Final proportion of non-zero values is large.

#20 ayeTown opened 2 years ago
2
modify if statement for R 4.2.0

#19 inoue0426 closed 2 years ago
1
Need to deal with R 4.2.0

#18 inoue0426 closed 2 years ago
5
ALRA and Seurat

#17 jsim91 opened 2 years ago
1
Imputation before other QC steps?

#16 ayeTown opened 2 years ago
0
Run ALRA in Seurat v4.1.0

#15 kellyliyichen closed 2 years ago
0
GetAssayData(pbmc, slot = "counts") gives 0 x 0 matrix

#14 Lumskie opened 2 years ago
1
Error in asMethod(object)

#13 lf96abc opened 2 years ago
0
During FindVariableFeatures after ALRA output, count slot is empty?

#12 lkqnaruto opened 3 years ago
0
Tips for larger matrices?

#11 PedroMilanezAlmeida opened 3 years ago
3
Can I use ALRA imputed matrix to perform the `Find Marker Gene` step ?

#10 gsx-ucas opened 3 years ago
2
Input format (genes as rows?)

#9 anacarolinaleote closed 4 years ago
1
big data set and K

#8 yuGithuuub opened 4 years ago
2
Input data structure

#7 arcolombo closed 5 years ago
1
Switching to quantiles and adding support for intel MKL implementation of SVD

#6 linqiaozhi closed 5 years ago
0
Imputing integrated data

#5 kvshams opened 5 years ago
1
Provided normalized function

#4 peeratant closed 5 years ago
4
Input and Output

#3 Winnie09 closed 5 years ago
3
alraSeurat2 FUNCTION NOT FOUND!!!!

#2 EDYAC closed 5 years ago
3
Best Practice for imputing big data-sets

#1 AMA111 closed 5 years ago
2