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Currently https://galaxy-iuc-standards.readthedocs.io/en/latest/best_practices/shed_yml.html does not specify a recommend order for the `.shed.yml` entries, but we have a convention in the order used …
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Hey there Bioimage zookeepers!
We would like to explore the possibility into making [the Galaxy project](https://galaxyproject.org/) an official community partner at the BioImage Model Zoo. This pr…
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When trying MaAsLin 2 I found some issues, that make the wrapper basically unusable.
(a) The fixed_effects can be different for every dataset, they are however hard-coded to only allow a choice of t…
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I provided a `paired` collection to bbduk which failed with the following error:
```
java -ea -Xmx30303m -Xms30303m -cp /srv/galaxy/var/dependencies/_conda/envs/mulled-v1-ace992d4e0298…
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`seahorn` options:
```
sea pf -O2 -g --step=large --track=mem --horn-inter-proc-mem \
--horn-global-constraints=true --horn-stats --enable-nondet-init --strip-extern \
--externalize-addr-taken-fun…
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need to test whether this entry in tpv/tools.yml will work for all mothur tools including ones with specific entries. This will protect user data from large files created in error.
```
toolshed.…
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Should the kmer length of bracken always have the same length of the used kraken2 DB ?
When does it make sense to use a different length?
We would like to provide the user of bracken in Galaxy wit…
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The site symmetry group labels are abbreviated in the 3D listings returned by `bandreps` (because they are abbreviated in Bilbao's BANDREP program). As an example, in e.g. space group 163, we have sit…
thchr updated
2 months ago
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[Rptools](https://github.com/brsynth/rptools) is toolsuite which includes multiple tools; multiple PRs have been opened in order to include them as independent ones, but I think should be integrated i…
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IUC has quite some tools using datatypes that are not known to Galaxy:
```
for i in $(grep 'format="' . --include "*xml" -r | sed "s/'/\"/g" | sed 's/.*format="\([^"]*\)".*/\1/' | sed 's/,/\n/g' |…