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Hello,
I have been working with scGPT for the last week and I am studying currently the GRN part. By running the Tutorial_GRN notebook, and downloading the data/model in the links provided, I am un…
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Hi,
I am trying to use Python installed within a Python virtual environment on a Mac (Catalina) in order to use the Leiden algorithm within Seurat FindClusters(). Running `pip freeze` in the virtu…
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Hello,
Hope you're doing well! I'm curious what your thoughts are for dealing with interpreting and visualizing sourmash signatures given some metadata.
My workflow is:
1. compute sourmash sig…
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### Problem/New Plotter
When joining two main canvases in a row or column, the specified size of the second canvas appears to be ignored along one dimension.
For example, if we have
```
data1 = …
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Hi!
I was playing a bit with spikecomponents, and I was wondering if someone was already working on it, or if it could be worth it that I add a clustering class (https://github.com/SpikeInterface/s…
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1. Extend the `Subgraph` class to add support for [`python-igraph`](https://igraph.org/python/).
1. Add a notebook to show example uses of `igraph` in comparison with `networkx`.
1. Integrate us…
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## Template for bug reports
* JASP version:
* OS name and version:
* Analysis:
* Steps to reproduce:
## Template for enhancement requests
* Enhancement:
* Purpose:
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Hello,
I have been using the newest pull from the master branch and everything works well, except now my cells will not cluster together along the y-axis. I have tried setting `group_by_cluster = …
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First, thank you for the tool! I have found it to work quite well in accordance with clinical notes.
I am using `random_trees` with my data to obtain hierarchical structure of subclusters for later…
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Hello!
I had a problem with installing slmpy.
After installing all the libraries of requirements and trying to install slmpy, the following error occurs: pkgconfig.pkgconfig.PackageNotFoundError…