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Hello @RCollins13 ,
Thank you for great work, I am trying to use this to plot CNV for bam generated from 10x longranger wgs pipeline
Using following steps, I take a random deletion start and…
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### Description of bug
Myself and the nf-core/taxprofiler team were testing ganon 2.0 with the newly merged ganon MultiQC module as in MultiQC v1.24.1.
Despite the new log file being relatively si…
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Hi, I finished running the pipeline on one sample, which called far fewer variants than longranger. This is a sample with low library quality so it might be correct. I am running it on a second sample…
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Hello,
I am attempting to run Valor on a non-human dataset for which no default Sonic file is available.
I thus followed the guidelines on Sonic's GitHub page and created my own file. I generate…
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Hello, Thank you for the great pipeline!
Now, I try to run the pipeline to call SV. I get an error when trying to run sv_pipeline.cwl, the error as below:
```Shell
cwltool /home/liuhui/ctDNA-pipeli…
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Hi there,
Thank you for your work in developing this tool. I've followed the instructions on your page but am encountering an error when running the `athena-meta` command.
Here are the steps I'…
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I have been running ema (version 0.6.2) on reads in the longranger basic FASTQ format (BX:Z in header). I pipe the output directly to `samtools sort`. My command looks something like this.
```
em…
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Hi !
I got this errors while running graphunzip.py using linked reads.
`,ignoring the line, are you sure the BX:Z: tags are there ?`
And then output is only filled with this lines.
```
^D¶…
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Hi,
I'm trying to download the reference and uniqueness files to run Aquila but the files seem to be tar'ed HTML files which I can't unzip
Best,
Melissa
> (/lb/project/tools/conda/Aquila) We…
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Will the reference sequence be considered later from linear genome to graph genome?