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I have been training a set of CT images (already pre-processed) with two classes in GaNDLF (0.16) on a NVidia 3090 24GB GPU. I think I have set all the settings and hyperparameters to demand the minim…
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Hello! Very interesting work. I remember this being presented at MICCAI in 2020 and I have had the printed paper on my desk ever since.
However, I never got the time to play around with these ideas…
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Hi @andreped
Thanks for this great software and workflow.
I would like to generate a model which classifies the epithelia in the colon from WSIs into villi (usually at the boundary) and crypts (c…
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We could replace spams lasso with a small NN based mapping to the concentrations. That should speed up the augmentor. What do you think @Peter554 ?
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**Bug report** (maybe I'm just misunderstanding something):
```python
@dask.delayed(pure=True)
def load_image(filename, coords=None):
return None if filename is None \
else clip_ima…
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This code is returning an error:
```python
W_target = dask.array.from_array([
[0.5807549, 0.08314027, 0.08213795],
[0.71681094, 0.90081588, 0.41999816],
[0.38588316, 0.42616716,…
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Thank you for open sourcing your code. I have a question regarding the two lines of code below.
Why you inversed the eigen vectors based on the principal eigen vector's values?
```
# Make sure…
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Hi Peter,
I got a ModuleNotFoundError when importing staintools.
Here's the traceback:
```
Traceback (most recent call last):
File "", line 1, in
File "/lib/python3.6/site-packages/stainto…
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Had a few issues while using this library. They are as follows:
* Installation issue(spams error)
* Running stain normalization on a batch if 15000 images resulted in the Negative optical density …
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Bug in action: https://drive.google.com/open?id=1BTUg0L8MyhnI-w85BPVp4cf6itA34jo9
```
$ python main.py
List of available plugins:
Normalize (Macenko) Version 0.1
OTSU threshold Versi…