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### Operating System
Other Linux (please specify below)
### Other Linux
Red Hat Enterprise Linux release 8.6
### Workflow Version
v1.1.1-g999fb4e
### Workflow Execution
Command li…
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Somewhat surprisingly, based on SVD on LoTR embedding matrix not yielding obvious results, it looks like there *might* be something to the results from the Lolita linear embedding matrix.
To do:
-…
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- [x] Remove all donwstream analyses e.g., DeSeq & PCA
- [x] change script [[count-matrix.py](http://count-matrix.py/)](http://count-matrix.py/) line 40 sep="\t" to sep = ","
- [x] switch to one s…
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I have noticed that Vertex Fitting spits out a huge number of error messages (seemingly related to the covariance matrix of the vertex fit).
This can be directly reproduced by running the vertex fi…
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### Overview
We need to create a template issue for TWE: Research: Rapid Qualitative Analysis (RQA): Pre-process (named in the format as `TWE: Role: Direct Object: Action Verb`)] so that we have a co…
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## Description
I encountered a KeyError when running the statistical analysis method in CellPhoneDB with interaction scoring enabled. I want to gracefully handle missing keys by returning np.nan inst…
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### Suggested Improvement
Issue #39 is titled for a specific attack capability, then in comments we start fleshing out an attack capability table.
This ticket is about defining that table but leav…
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We're trying to reference a private CodeQL pack when running `init`. When this runs in Github actions, we get `HttpError: Not Found`.
```
name: "SAST Scans"
on:
push:
branches: ["maste…
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Dear Prof. Zhang:
I met errors when performed GWAS using IIIVmrMLM as shown below:
`[1] "Single-environment analysis for Pheno1 begins"`
`[1] "Kinship matrix caculating"`
`Error in t(uu) %*% …
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- [x] pairwise ml distances (.mldist file). Return in whatever in-memory data format is easiest - I'll need to convert this to a numpy array on my side of things anyway.
- [x] RapidNJ - (take in a ve…