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Hello, I just used isocor2 to correct my mass distribution vector data. I noticed that in the result, there are areas for isotopologues that were not detected before correction, like this one:
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Dear sir/madam,
I am investigating the combined effect of a drug and one nutrient in a cohort of 1280 people. However, I only have 77 patients / samples using the drug. I wanted to match these pati…
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**Submitting author:** @ym2877 (Yoli Meydan)
**Repository:** https://github.com/korem-lab/pymgpipe
**Branch with paper.md** (empty if default branch): joss-paper
**Version:** v0.15.0
**Editor:** @fboe…
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Hello,
I am trying to use CAMERA to detect C13 labeled compounds in my data following the manual on the [bioconductor page](https://www.bioconductor.org/packages/release/bioc/vignettes/CAMERA/inst/…
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To follow this question [metaGEM/issues/111](https://github.com/franciscozorrilla/metaGEM/issues/111), I also have some questions about the Medium for Carveme and SMETANA.
When I used Carveme to bu…
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**Submitting author:** @sportiellomike (Mike Sportiello)
**Repository:** https://github.com/sportiellomike/fluximplied
**Branch with paper.md** (empty if default branch):
**Version:** v.0.2.0
**Edito…
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Make all the args/kwargs consisten, e.g. `change_constraint(...; lb=..., ub=...)` vs `change_bound(....; lower=..., upper=...)`
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So I'll use this issue to kick off the discussion on EFMs and MCSs
The two methods I've had the most luck with in calculating EFMs and MCSs are [`efmtool`](http://www.csb.ethz.ch/tools/software/efmto…
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So this was brought up in #303 and #389, it might be worth talking about the relative merits / inconvenience of having Reaction, Metabolite, and Gene objects aware of the model they're a part of.
I…
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Example: https://mila.quebec/en/publications/
It would be nice to reuse the same code as in the Mila website. Not sure if that's 'easily' possible via RTD