sneumann CAMERA issues - Githubissues

sneumann / CAMERA

This is the git repository matching the Bioconductor package CAMERA: Collection of annotation related methods for mass spectrometry data

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Can't load source package, errors from parse()ing fct_findAdducts.R

#82 jmorim opened 8 months ago
0
pcgroup clarification

#81 apulvino closed 6 months ago
6
Understanding how the calculation of adducts works

#80 szfilip opened 1 year ago
0
Please could somebody outline how the number of pcgroups are calculated and why a feature might be in the same pcgroup as another?

#79 Pembs closed 1 year ago
1
Whether the mzabs parameter of findAddct() can be adjusted by the user？

#78 Suyun11 opened 1 year ago
1
Error in findIsotopesWithValidation function

#77 chuyaowang closed 1 year ago
4
Changed language in desctiption and details for clarification

#76 samsonjm closed 8 months ago
1
Several || left where _R_CHECK_LENGTH_1_LOGIC2_ barfs

#75 sneumann opened 3 years ago
0
Add class1 class2 arguments

#74 a-velt opened 3 years ago
0
Add of class1 and class2 options in the annotateDiffreport function

#73 a-velt opened 3 years ago
2
fillPeaks(xset_gr) error in xcms

#72 manasonur opened 3 years ago
1
The larger the isotope number, the larger the m/z error

#71 Annatkachev opened 3 years ago
1
Unexpected outputs: m/z differences and isotope number

#70 Annatkachev opened 3 years ago
1
ions in the same pseudospectrum not identified as isotopes

#69 peterdaniel666 opened 3 years ago
0
[WIP - waiting for !66 ]Transmit annotate diffreport params to group corr

#68 Lain-inrae closed 3 years ago
0
Some parameters given to annotateDiffreport are not transmitted to groupCorr

#67 Lain-inrae closed 3 years ago
0
calcIso flag is transmited to groupCorr sub-function in annotateDiffreport function

#66 Lain-inrae closed 3 years ago
0
calcIso in annotaeDiffreport not propagated down to groupCorr

#65 sneumann closed 3 years ago
1
False negatives, losing peaks when using xsAnnotate on an xcmsSet

#64 jmorim closed 3 years ago
2
Dependency on deprecated xcmsClusterApply

#63 sneumann opened 3 years ago
4
Unit test failure: number of annotations changed

#62 sneumann closed 4 years ago
1
Update neutraladdition.csv

#61 shutinet closed 4 years ago
2
misunderstanding between "O" and "0"

#60 shutinet closed 4 years ago
1
Wrong molecular mass for neutral addition "CF3COOH"

#59 shutinet closed 4 years ago
0
CAMERA Peaklist table is empty

#58 ZandkarimiF opened 4 years ago
4
findIsotopes throws "Error in mint[ipeak, , drop = FALSE] : subscript out of bounds

#57 jmorim opened 4 years ago
3
Possible bug in `findIsotopesWithValidation`

#56 breidan opened 4 years ago
2
Fixed Bug in labelling and/or legend of plotEICs

#55 jmosl01 opened 4 years ago
0
Error in fillpeaks after XCMSnExp conversion

#54 ghost opened 4 years ago
3
Change all messages from cat to message

#53 stanstrup opened 4 years ago
0
Export core function to identify isotopes

#52 jorainer opened 4 years ago
1
Expose the function to identify isotopes?

#51 jorainer opened 4 years ago
4
groupCorr cor_exp_th = 0.90 separate two > 0.9995

#50 cbonnefoy opened 4 years ago
6
use which.max to keep up with latest changes in R 3.6

#49 korseby opened 4 years ago
3
getReducedPeaklist values not reported

#48 korseby closed 4 years ago
3
creating custom rule table for CAMERA

#47 vlagani opened 4 years ago
2
Fix plotPsSpectrum()

#46 jmorim closed 4 years ago
2
Error in if (rtr[2] < rtim_range[1] | rtr[1] > rtim_range[2] | mzr[2] < : missing value where TRUE/FALSE needed

#45 YuanwenGuo opened 4 years ago
1
failure: length > 1 in coercion to logical

#44 sneumann opened 4 years ago
1
Corrected vignette text not being visible due to not wrapping around …

#43 antonwnk closed 4 years ago
0
Vignettes: code not visible

#42 antonwnk closed 4 years ago
3
xraw parameter

#41 jsaintvanne opened 5 years ago
2
Provide option to select intval in findAdducts function within xsAnnotate.R script

#40 sunil20dhakad closed 5 years ago
3
No option to change intval (intensity type) in findAdducts function

#39 sunil20dhakad opened 5 years ago
2
Isotopes assigned to different pc groups

#38 shefalilathwal opened 5 years ago
4
Using CAMERA for non-LC data with no retention time and importing peaklists directly into CAMERA

#37 etrh opened 5 years ago
2
Use MSnbase objects for storing CAMERA annotations

#36 stanstrup opened 5 years ago
0
Export PSPectra as annotated spectrum

#35 sneumann opened 5 years ago
1
CAMERA fails to load from source files

#34 ldag27 closed 5 years ago
1
From XCMS3 - NA values in xcmsSet. Use fillPeaks()

#33 lecorguille opened 6 years ago
19