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Currently, the memote report expects reaction annotations to biological databases on the exchange reactions and biomass reaction. Exchange reactions are purely mathematical constructs to enable a FBA …
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The Dockerfile states that the installation of CPLEX is interactive, which is true by default, however there is the option to provide a configuration file along with the "silent" command to install no…
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Opening this issue on behalf of Anush @anushchp:
#### Problem description
> It complains that O2 consuming reactions don’t have fixed bounds. Thermodynamics (using pyTFA: https://github.com/EPFL-…
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As a developer, I would like to investigate if there is a good solution for improving the "Findability on the Web" for pages with multiple entities, so that I can decide if these pages could be adapte…
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Calling
r.getScaledFluxControlCoefficientMatrix() or getScaledConcentrationControlCoefficientMatrix()
give the error message:
Metabolic control analysis only valid for primitive reaction kinetics m…
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Really appreciate your work.
I am able to download and use the individual models from Hugging face.
How I can Combine the "biobert_chemical_ner", "biobert_genetic_ner" and "biobert_diseases_ner"…
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As I noted [here](https://github.com/C-CoMP-STC/metabolic-systems-education/issues/23#issuecomment-1751774553) it would be ideal if our version of Escher-FBA had the maps/models we would want students…
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Hi all,
I have been experiencing a peculiar problem with my genome-scale reconstructions being unable to take up any substrates/metabolites or excrete any products/metabolites. I provide a mineral …
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## Short description of the problem
anvi-run-kegg-kofams terminated prematurely after producing the hmm.table file
## anvi'o version
Anvi'o .......................................: marie (v8)
…