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Currently when a sample_name containing a character that is not acceptable in Qiita goes through the amplicon notebook, there is no warning produced and the user can go on to making a pre-preparation …
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Hi Francisco,
I recently downloaded metagem, I used the manual installation guideline. I'm trying to run fastp but keep getting this error. I am unsure what could be causing this. I was able to run…
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@jmtsuji Is there any quick read-level way of detecting if there is a high likelihood of multiple genomes being present before assembly? If my employers commercialize this, there is a high probability…
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Hi,
When I run SVABA with the metagenomics reads alignment to a large microbial reference, I get this error
```
Running region GUT_GENOME286887_234:1-1,697(*) on thread 139746049373952
Running r…
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Tracking updates of www.redditgifts.com
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Example [analysis MGYA00199483](https://www.ebi.ac.uk/metagenomics/analyses/MGYA00199483), assuming these are the files required:
| reads | name | format | url |
| --- | --- | --- | --- |
| Taxon…
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### What happened?
This bug is linked to specifying a directory which holds directories which hold `fastq(.gz)` files, as an argument. It is not an issue when specifying a full path to a `fastq(.gz)`…
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Hello,
I am trying to run your script to detected hgcAB genes in some Metagenomics samples but I am encountering an error when trying on your test sample. This is the error message:
==…
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### What happened?
Hello,
I am encountering a bug with the latest versions of the workflow when aggregating kraken reports with bracken. Something is wrong with the parsing of the kraken report …
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With the new version of the pipeline, the rule is broken and doesn't give any output.
Tried running it on the shell but it wouldn't work because the output folder didn't exist.
TJ noticed another p…