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walaj
/
svaba
Structural variation and indel detection by local assembly
GNU General Public License v3.0
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Add missing include <cstdint>
#142
francois-a
opened
3 weeks ago
0
segmentation fault - tovcf command
#141
ahwanpandey
opened
3 months ago
0
error while using exome mode
#140
onurerdoganmd
opened
3 months ago
0
missing make in Dockerfile
#139
kandabarau
opened
4 months ago
0
Error: Found chromosome in region file not in reference genome. Skipping
#138
shguturu
opened
5 months ago
5
Fastest mode to run svaba
#137
CHOWDHURY098
opened
6 months ago
0
version number not updated？
#136
gudeqing
opened
8 months ago
0
svaba segmentation fault (core dumped)
#135
yungruifei
closed
6 months ago
12
Unexpected SV with a zero coordinate
#134
gudeqing
opened
9 months ago
1
True deletion discarded in final vcf
#133
yiqijiang17
opened
9 months ago
0
std::regex_error
#132
ahwanpandey
closed
9 months ago
3
Genotype quality
#131
MikeWLloyd
opened
11 months ago
2
multiple wgs cohort
#130
zhaowsong
closed
1 year ago
0
Compiling error for missing header files
#129
lye2
opened
1 year ago
4
recommended parameters when one chr has higher coverage than the others
#128
EHC2019
opened
1 year ago
1
The target SV in *.svaba.sv.vcf is not found in *.alignments.txt.gz
#127
hhd1008611
opened
1 year ago
4
Number of sequences in BAM header mismatches reference
#126
tnnandi
opened
1 year ago
5
[E::bwa_idx_load_from_disk] fail to locate the index files
#125
chorong5155
closed
1 year ago
1
Installation issue
#124
tnnandi
opened
1 year ago
10
"Caught stoi/stod/stof error" in breakpoints file
#123
catalinamed
opened
1 year ago
0
option --max-reads-mate-region (-M) doesn't work in v1.2
#122
jamsmad
closed
1 year ago
0
Update Dockerfile
#121
seedgeorge
closed
1 year ago
0
Request to use Python instead of C++ and Java
#120
mjmaher987
closed
1 year ago
0
No SV output with metagenomics data
#119
wshuai294
closed
1 year ago
1
How to input multiple case bams?
#118
kimin0402
closed
2 years ago
1
How can I find contig info of "~~01D"?
#117
hadgie
closed
2 years ago
2
Is it possible to infer duplications/deletions/translocations/insertions/inversions from SvABA output?
#116
Giuseppe1995
opened
2 years ago
2
"Duplicate" kgID when doing annotation.
#115
sxwcasd
opened
2 years ago
2
feat: Add Dockerfile
#114
Rapsssito
closed
2 years ago
1
Is it possible to recognize complex structural variants with SvABA?
#113
Giuseppe1995
closed
2 years ago
2
--case-bam is unrecognized
#112
aubreybailey
closed
1 year ago
0
Extraction of variant types
#111
Danisov
opened
2 years ago
0
SvABA not reading regions file
#110
dannyjomaa
closed
2 years ago
4
Recommendation of QUAL?
#109
greekkey
opened
2 years ago
2
SV and indel size cutoff
#108
tgong1
opened
3 years ago
0
ERROR: Unable to open index file: ucsc.hg19.fa, yet it's in the current directory.
#107
jamesdalg
opened
3 years ago
2
Plan to adapt for the use of long reads?
#106
ehjChun
opened
3 years ago
0
Questions about *alignments.txt.gz
#105
yifnzhao
opened
3 years ago
0
Missing and incomplete output VCF headers
#104
fgvieira
opened
3 years ago
0
Very large memory usage
#103
fgvieira
opened
3 years ago
1
comparing svaba to snowman
#102
anoronh4
opened
3 years ago
0
How to speed up / debug deduplicating VCF step?
#101
jbalberge
opened
3 years ago
13
What does the GT(genotype) 0/0 means in final sv?
#100
panguangze
opened
3 years ago
0
Fastest way to run svaba
#99
jsmedmar
opened
3 years ago
1
Plans for a new release?
#98
pieterlukasse
opened
3 years ago
0
Plans for a new release
#97
pieterlukasse
opened
3 years ago
0
Infinite loops
#96
esamorodnitsky
opened
3 years ago
4
Saying reference genome doesn't match
#95
neharajkumar
opened
3 years ago
3
Required memory for writing extracted reads
#94
jykr
opened
3 years ago
4
invalid argument to stoi
#93
jthmiller
closed
3 years ago
2
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