issues
search
walaj
/
svaba
Structural variation and indel detection by local assembly
GNU General Public License v3.0
231
stars
44
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
segmentation fault - tovcf command
#141
ahwanpandey
opened
1 month ago
0
error while using exome mode
#140
onurerdoganmd
opened
2 months ago
0
missing make in Dockerfile
#139
kandabarau
opened
3 months ago
0
Error: Found chromosome in region file not in reference genome. Skipping
#138
shguturu
opened
4 months ago
5
Fastest mode to run svaba
#137
CHOWDHURY098
opened
5 months ago
0
version number not updated？
#136
gudeqing
opened
6 months ago
0
svaba segmentation fault (core dumped)
#135
yungruifei
closed
5 months ago
12
Unexpected SV with a zero coordinate
#134
gudeqing
opened
7 months ago
1
True deletion discarded in final vcf
#133
yiqijiang17
opened
8 months ago
0
std::regex_error
#132
ahwanpandey
closed
8 months ago
3
Genotype quality
#131
MikeWLloyd
opened
9 months ago
2
multiple wgs cohort
#130
zhaowsong
closed
11 months ago
0
Compiling error for missing header files
#129
lye2
opened
11 months ago
4
recommended parameters when one chr has higher coverage than the others
#128
EHC2019
opened
1 year ago
1
The target SV in *.svaba.sv.vcf is not found in *.alignments.txt.gz
#127
hhd1008611
opened
1 year ago
4
Number of sequences in BAM header mismatches reference
#126
tnnandi
opened
1 year ago
5
[E::bwa_idx_load_from_disk] fail to locate the index files
#125
chorong5155
closed
1 year ago
1
Installation issue
#124
tnnandi
opened
1 year ago
10
"Caught stoi/stod/stof error" in breakpoints file
#123
catalinamed
opened
1 year ago
0
option --max-reads-mate-region (-M) doesn't work in v1.2
#122
jamsmad
closed
1 year ago
0
Update Dockerfile
#121
seedgeorge
closed
1 year ago
0
Request to use Python instead of C++ and Java
#120
mjmaher987
closed
1 year ago
0
No SV output with metagenomics data
#119
wshuai294
closed
1 year ago
1
How to input multiple case bams?
#118
kimin0402
closed
1 year ago
1
How can I find contig info of "~~01D"?
#117
hadgie
closed
2 years ago
2
Is it possible to infer duplications/deletions/translocations/insertions/inversions from SvABA output?
#116
Giuseppe1995
opened
2 years ago
2
"Duplicate" kgID when doing annotation.
#115
sxwcasd
opened
2 years ago
2
feat: Add Dockerfile
#114
Rapsssito
closed
2 years ago
1
Is it possible to recognize complex structural variants with SvABA?
#113
Giuseppe1995
closed
2 years ago
2
--case-bam is unrecognized
#112
aubreybailey
closed
1 year ago
0
Extraction of variant types
#111
Danisov
opened
2 years ago
0
SvABA not reading regions file
#110
dannyjomaa
closed
2 years ago
4
Recommendation of QUAL?
#109
greekkey
opened
2 years ago
2
SV and indel size cutoff
#108
tgong1
opened
2 years ago
0
ERROR: Unable to open index file: ucsc.hg19.fa, yet it's in the current directory.
#107
jamesdalg
opened
2 years ago
2
Plan to adapt for the use of long reads?
#106
ehjChun
opened
3 years ago
0
Questions about *alignments.txt.gz
#105
yifnzhao
opened
3 years ago
0
Missing and incomplete output VCF headers
#104
fgvieira
opened
3 years ago
0
Very large memory usage
#103
fgvieira
opened
3 years ago
1
comparing svaba to snowman
#102
anoronh4
opened
3 years ago
0
How to speed up / debug deduplicating VCF step?
#101
jbalberge
opened
3 years ago
13
What does the GT(genotype) 0/0 means in final sv?
#100
panguangze
opened
3 years ago
0
Fastest way to run svaba
#99
jsmedmar
opened
3 years ago
1
Plans for a new release?
#98
pieterlukasse
opened
3 years ago
0
Plans for a new release
#97
pieterlukasse
opened
3 years ago
0
Infinite loops
#96
esamorodnitsky
opened
3 years ago
4
Saying reference genome doesn't match
#95
neharajkumar
opened
3 years ago
3
Required memory for writing extracted reads
#94
jykr
opened
3 years ago
4
invalid argument to stoi
#93
jthmiller
closed
3 years ago
2
Duplicated breakend IDs
#92
kateeasoncrukci
closed
1 year ago
7
Next