-
### Description of feature
Adding 2 classifier approaches
Centrifuge and metaPhlan2
-
I'm wrapping a `NamedDimsArray` in Microbiome.jl, and I'm getting some test errors that I can't begin to figure out how to address in `BiobakeryUtils.jl`, which has `Microbiome` as a dependency. The e…
-
Currently the "mpa_v20_m200" database name is hardcoded into the metaphlan_database and metaphlan_bowtie rules. We should support a configuration option giving a path to existing database files.
ressy updated
5 years ago
-
Hi,
Would you mind to answer me the two questions from me?
1. After I follow your scripts: how to convert phyloseq object to mpse?
#convert phyloseq object to mpse
#library(phyloseq)
#data(es…
-
Hello,
I tried running export2graphlan.py but get the following error:
` File "/myname/metaphlan/export2graphlan-0.22/export2graphlan.py", line 23
def scale_color((h, s, v), factor=1.0):
…
-
Hi @bebatut do you know if these tools work with the latest humann / metaphlan versions:
- [combine_metaphlan2_humann2](https://github.com/ASaiM/galaxytools/tree/master/tools/combine_metaphlan2_hum…
-
各位老师好!我在使用 `mp_import_metaphlan` 输入metaphlan4的相对丰度的输出结果文件时,指定了我metaphlan4对应的数据库的进化树文件 `mpa_vOct22_CHOCOPhlAnSGB_202212.nwk` 。但是输入报错,具体如下:
```
metaphlan_data
-
Hi,
I generated tree and the alignment for the metagenomic samples. Now I am trying to visualize the tree using graphlan. Based on what can be seen in the tutorial for visualization, one have to dow…
-
@JannoPeilert
add other input, such as:
- [ ] metaphlan
-
Dear developer(s),
I am new to the biobakery VM images and currently I am going through the biobakery_workflows tutorials following:
https://github.com/biobakery/biobakery/wiki/biobakery_workflo…