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biobakery
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biobakery_workflows
bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validated tools and parameters.
http://huttenhower.sph.harvard.edu/biobakery_workflows
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Add extended IUPAC to reverse complement
#36
tkuntz-hsph
closed
2 months ago
1
Chunk taxonomy table for species assignment
#35
tkuntz-hsph
closed
2 months ago
3
Error installing
#34
imonteroo
closed
8 months ago
1
worflow issue using conda
#33
marcelladane
closed
1 year ago
1
mpa_v30_CHOCOPhlAn_201901 missing (but mpa_v31_CHOCOPhlAn_201901 present instead)
#32
rdauria
closed
1 year ago
1
ValueError: Unable to find binary or script `metaphlan'
#31
samd1993
closed
1 year ago
1
Add files via upload
#30
WillNickols
opened
1 year ago
0
TypeError: object of type 'dict_keyiterator' has no len()
#29
jowodo
closed
2 years ago
1
nanopore reads?
#28
mawa86
closed
2 years ago
1
"biobakery_workflows wmgx_vis" grouping
#27
lk754673712
closed
2 years ago
1
biobakery_workflows wmgx_vis error
#26
lk754673712
closed
2 years ago
3
Download biobakery_workflows v3.0.0a7 and find that linux-aarch64 is not supported
#25
wj7643
closed
2 years ago
1
error installing databases "no module named 'leveldb'"
#24
emi-panzetta
closed
2 years ago
1
Problem with databases install
#23
mpozuelo
closed
2 years ago
1
Visualization for Whole Metagenome Shotgun (wmgx_vis)
#22
Marcocardinphd
closed
2 years ago
1
Humann Failed! Error message : Error executing action 0. Original Exception:
#21
imonteroo
closed
2 years ago
1
Error while removing intermediate files after running biobakery 16s pipeline
#20
evilvenom
closed
2 years ago
1
removed the rename code
#19
sagun98
closed
2 years ago
3
problems with writing reslults to a file in rna_dna_norm.py
#18
hilasha2
closed
2 years ago
1
strainphlan_ordination_vis R script
#17
fbeghini
closed
3 years ago
3
groups: invalid choice: 'uniref90_level4ec' (choose from 'uniref90_rxn', 'uniref50_rxn')\n"`
#16
Mavlarn
closed
3 years ago
1
Problem with setting environment variable $BIOBAKERY_WORKFLOWS_DATABASES
#15
gssin20
closed
3 years ago
3
Universal vis
#14
ljmciver
closed
3 years ago
0
the password of the image(win10,visualbox and vagrant)
#13
WatsonWoo
closed
3 years ago
1
workflow 16s error
#12
BioinfoMonzino
opened
3 years ago
1
3.0.0 alpha
#11
ljmciver
closed
3 years ago
0
error:biobakery_workflows_databases --install 16s_usearch
#10
LiZhihua1982
opened
3 years ago
0
Errors:"biobakery_workflows_databases --install isolate_assembly"
#9
LiZhihua1982
opened
3 years ago
0
About the parameters of kneaddata
#8
qiangsir
closed
2 years ago
2
Incorrect download_eggnog_data.py arguments
#7
evanroyrees
opened
3 years ago
2
Cannot install full shotgun databases (wmgx) in the biobakery VM image
#6
hyfood
opened
3 years ago
10
Access to Terra Workspace
#5
shbrief
closed
3 years ago
1
Aws batch workflow
#4
ljmciver
opened
4 years ago
0
Initial stats workflow
#3
ljmciver
closed
4 years ago
0
biobakery_workflows_databases not working
#2
djbradshaw2
closed
4 years ago
1
Terra wdl
#1
ljmciver
closed
4 years ago
0