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It turns out (I think!) you can take just about any subcortical ROI and turn it into a surface using a few FreeSurfer commands:
```
mri_tessellate aseg.mgz 17 lh.hippocampus.orig
mri_tessellate ase…
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I believe this is caused by the font used by MGZ to display text files. The width of each character is not the same, so the table ends up being misaligned when displayed. I'll post a picture of the pr…
ghost updated
3 years ago
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Hi, I am a beginner using the prfmodel.
I have completed the preprocessing of fMRI and am now trying the pRF model.
I plan to try prfanalyze-vista and set the path according to the BIDS structure …
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Currently the BIDS anatomical locations (NAS,LPA,RPA) are created on the Freesurfer MRI according to the directions on the mne_bids website. This requires creating a freesurfer import and T1.mgz reco…
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Are there any toolboxes to replace Freesurfer? I am working under Windows 10 OS.
The QuickNAT wrapped by MatConvNet works. I read in a volume image using Matlab and send it as the input of **Segme…
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As reported on forum [here](http://community.mrtrix.org/t/dwipreproc-eddy-cuda-slspec-unable-to-open-file-multibandgroups/1573/23).
Somehow a non-UTF8 byte is being exported by the `mrinfo -json_al…
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The latest FW is now 4.90, and Evilnat CFW is at 4.90 as well. Would be nice to have ManaGunZ working with this FW.
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**Describe the feature you are missing**
A clear and concise description of the feature. Should include information on the expected inputs and output.
FSbrain should be able to load p-value or oth…
knutj updated
2 years ago
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Currently, we use Nipype's full recon-all interface to detect whether FreeSurfer has been fully run, and also to finish the run if it has not.
This has complications when using FreeSurfer subjects …
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https://github.com/tknapen/nsd_access/blob/ffa837a001de2b7230ece6750c168a59a146b021/nsd_access/nsda.py#L220
@tknapen we have a bug with the mgz.ctab files not being read by pd.read_csv at the line …